CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0538000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative S.X. H.G.
0.83 95.8 Os02g0332200 AK067672.1 - T-complex protein 1 delta subunit 2e-29 At3g18190 chaperonin, putative S.X. H.G.
0.77 93.1 Os07g0209000 AK058399.1 - Dolichyl-di-phosphooligosaccharide-proteinglycotransferase (Oligosaccharyltransferase)-like 1e-24 At5g66680 DGL1 S.X. H.G.
0.71 89.6 Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative S.X. H.G.
0.57 77.0 Os06g0562600 AK067114.1 - T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36) 2e-88 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
0.53 71.3 Os08g0207000 AK058705.1 - 40S ribosomal protein S11 (S18) (YS12) (RP41) 4e-60 At3g48930 EMB1080 (embryo defective 1080) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 97.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.1 97.1 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.8 97.0 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.3 96.7 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.2 96.7 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.9 96.5 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6 96.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 1487 Os02g0247200 AK102024.1 - T-complex protein 1, gamma subunit (TCP-1-gamma)(CCT-gamma) (Matricin) 6e-73 At5g26360 chaperonin, putative C.G. S.X.
0.03 5e-1 38 Os03g0619400 CB653322 - Chaperonin Cpn60 family protein 1e-57 At5g20890 chaperonin, putative C.G. S.X.
0.01 1e-1 40 Os07g0208100 AK119482.1 - Polygalacturonase A (Fragment) 7e-1 At1g10640 polygalacturonase C.G. S.X.
0.01 5e-1 38 Os04g0114400 9632.m00150 - - 5e+0 At1g33890 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative C.G. S.X.
0.01 2e+0 36 Os10g0342300 9638.m01661 - Receptor-like protein kinase 8e-2 At4g32300 SD2-5 (S-DOMAIN-2 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 5e-83 309 Arabidopsis thaliana At5g26360 832705 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:unknown;BOMFPAV - - - C.G. S.X.
0.35 1e-44 182 Glycine max Gma.6692.1.S1_at AW309658 - - 4e-101 At5g26360 chaperonin, putative C.G. S.X.
0.48 0 1001 Hordeum vulgare Contig9215_at Contig9215 - - 8e-16 At5g26360 chaperonin, putative C.G. S.X.
0.44 2e-55 218 Populus trichocarpa PtpAffx.7885.2.S1_at BI138978 hypothetical protein - 1e-103 At5g26360 chaperonin, putative C.G. S.X.
0.61 0 1731 Triticum aestivum Ta.2554.1.S1_x_at CK210349 - - 1e-46 At5g26360 chaperonin, putative C.G. S.X.
0.20 3e-35 149 Vitis vinifera 1610292_at CB345949 hypothetical protein LOC100255417 - 3e-50 At5g26360 chaperonin, putative C.G. S.X.
0.65 0 1308 Zea mays Zm.16810.1.A1_at CF053948 T-complex protein 1 subunit gamma - 3e-32 At5g26360 chaperonin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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