Gene omics information

Query gene ID Os06g0528600
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9799.9Os06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)S.X.H.G.
0.4964.4Os08g0484500AK070359.1-Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1)4e-37At1g224102-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeS.X.H.G.
0.4253.9Os06g0646600CB659494-KNOX family class 2 homeodomain protein3e-14At4g32040KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)S.X.H.G.
0.3236.3Os03g0823100AK103844.1-Sugar transporter-like protein8e-26At5g59250sugar transporter family proteinS.X.H.G.
0.3134.5Os04g0488600AK060198.1-Protein of unknown function DUF565 family protein1e-11At5g43050unknown proteinS.X.H.G.
0.2831.1Os05g0530300CB624319-Conserved hypothetical protein6e+0At5g5671060S ribosomal protein L31 (RPL31C)S.X.H.G.
0.2422.4Os12g0276100AK062912.1-Hypothetical protein2e+0At3g17830DNAJ heat shock family proteinS.X.H.G.
0.2422.4Os01g0895100AK067698.1-Membrane-associated 30 kDa protein, chloroplastprecursor (M30)4e-27At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)S.X.H.G.
0.2321.2Os02g0649700AK069509.1-Peptidase M41, FtsH extracellular domaincontaining protein6e-34At3g47060ftsh7 (FtsH protease 7)S.X.H.G.
0.2219.4Os02g0768600AK059725.1--2e-68At5g09650AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.496.8GSM431940Shoot- -Fe-P biological rep2GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.396.7GSM174890G mock 4 dpi rep 2 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.096.6GSM431939Shoot- -Fe-P biological rep1GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.496.2GSM431936Shoot- -Fe+P biological rep2GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.396.1GSM387557Transgenic line 4, biological rep. 2GSE15448Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
4.296.0GSM159185Y Leaf, biological rep 3GSE6893Expression data for reproductive development in rice
4.296.0GSM431935Shoot- -Fe+P biological rep1GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.196.0GSM387561Transgenic line 22, biological rep. 3GSE15448Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
4.196.0GSM421694XOO, 4 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.196.0GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in rice
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.463e-94347Os02g0254700AK065153.1-Spermidine synthase 2 (EC 2.5.1.16) (Putrescineaminopropyltransferase 2) (SPDSY 2)2e-7At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.034e-138Os07g0408700AK099606.1-Spermidine synthase 2 (EC 2.5.1.16) (Putrescineaminopropyltransferase 2) (SPDSY 2)2e-10At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.024e-138Os12g05710009640.m03722-Metallothionein-like protein type 11e-1At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)C.G.S.X.
0.014e-138Os02g0221300AK065896.1-Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)7e+0At5g10300MES5 (METHYL ESTERASE 5)C.G.S.X.
0.014e-138Os11g0156300AK107140.1-Uncharacterized plant-specific domain containingprotein1e-2At5g57070hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.012e+036Os06g0127200AK122004.1-Nuclear protein SET domain containing protein3e-10At1g01920SET domain-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.181e-861Arabidopsis thalianaAt5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.---C.G.S.X.
0.142e-552Glycine maxGma.2891.1.S1_atBI971321--3e-49At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.570900Hordeum vulgareContig4092_atContig4092--1e-2At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.146e-1893Populus trichocarpaPtp.7547.1.S1_atBI120806hypothetical protein-3e-29At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.540843Triticum aestivumTa.7196.1.S1_atCK155443--6e-2At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.064e-961Vitis vinifera1609980_a_atCA818363spermine synthase-4e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.486e-154543Zea maysZm.6006.1.A1_atAY110392.1spermidine synthase 1-7e-14At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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