CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0493100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os06g0493100 AY256682.1 - Hypothetical protein 1e+0 At5g38950 germin-like protein-related S.X. H.G.
0.83 95.8 Os01g0940800 AK068247.1 - Beta-1,3-glucanase precursor 1e-5 At5g20560 beta-1,3-glucanase, putative S.X. H.G.
0.80 94.6 Os10g0569400 AK062449.1 - RIR1a protein precursor 3e-1 At2g29180 unknown protein S.X. H.G.
0.80 94.6 Os06g0591200 AK062563.1 - Conserved hypothetical protein 1e-1 At1g60950 FED A S.X. H.G.
0.73 91.1 Os10g0569600 BQ529575 - RIR1b protein precursor 1e+0 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) S.X. H.G.
0.43 55.4 Os03g0762400 AK071181.1 - Peroxidase precursor (EC 1.11.1.7) 1e-5 At5g67400 peroxidase 73 (PER73) (P73) (PRXR11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.1 99.9 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
54.3 99.9 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
23.6 99.4 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
23.5 99.4 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.2 98.8 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
15.3 98.7 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
10.2 98.0 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
10.2 98.0 GSM154958 Leaf_control_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
8.2 97.7 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.2 97.7 GSM262008 IAC165, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Os01g0834700 AK101559.1 - The start codon is not identified. 9e-10 At2g20280 zinc finger (CCCH-type) family protein C.G. S.X.
0.01 1e-1 38 Os01g0951000 AK111493.1 - The start codon is not identified. 3e-57 At5g13480 FY C.G. S.X.
0.01 2e+0 34 Os02g0303100 9630.m01912 - - 4e+0 At5g67450 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At5g38950 833887 germin-like protein-related F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 6e+0 32 Glycine max GmaAffx.89491.1.A1_at CK606189 - - 1e+0 At2g25355 exonuclease-related C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig18044_at Contig18044 - - 1e+0 At3g47070 unknown protein C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.90746.1.A1_at CK094582 - - 1e+1 At3g02640 unknown protein C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.31353.1.S1_at CA617131 - - 5e-9 At4g32120 galactosyltransferase family protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1616004_at CD802439 - - 3e+0 At5g35375 unknown protein C.G. S.X.
0.02 7e+0 30 Zea mays Zm.7739.1.A1_at BQ538356 - - 6e+0 At1g49260 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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