Gene omics information

Query gene ID	Os06g0483200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	91.4	Os06g0483200	AK120065.1	-	Beta-amyrin synthase	7e-1	At1g78960	ATLUP2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os10g0196000	AK068170.1	-	Cytochrome P450 family protein	4e+0	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os06g0680500	AK099745.1	-	Glutamate receptor 3.1 precursor (Ligand-gated ionchannel 3.1) (AtGLR2)	7e-6	At1g05200	ATGLR3.4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0644900	AK066709.1	-	Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2	1e-12	At2g47600	ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os06g0108900	AK101029.1	-	Homeobox domain containing protein	1e-12	At5g41410	BEL1 (BELL 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os07g0489300	AK060228.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	3e+0	At2g15320	leucine-rich repeat family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os10g0190500	AK070455.1	-	Protein of unknown function DUF594 family protein	3e-1	At5g06250	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os11g0107400	AK065945.1	-	Nodulin-like domain containing protein	1e-9	At5g45275	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os01g0574700	NM_193609.1	-	-	3e-3	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0804400	AK070931.1	-	Cytochrome P450 family protein	2e-1	At1g34540	CYP94D1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.9	99.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.7	99.0	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.6	99.0	GSM281584	Rice Zhonghua11, biological rep2	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants
16.6	98.8	GSM281583	Rice Zhonghua11, biological rep1	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants
15.3	98.7	GSM281585	Rice Zhonghua11, biological rep3	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants
10.7	98.1	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.3	98.1	GSM421682	XOC, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.1	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.7	97.8	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	7e-16	85	Os11g0285000	AK070534.1	-	Beta-amyrin synthase	3e-17	At2g07050	CAS1 (cycloartenol synthase 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	2e-166	589	Os05g0237700	9633.m01300	-	Terpenoid cylases/protein prenyltransferasealpha-alpha toroid domain containing protein	3e-2	At3g45130	LAS1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	2e-6	54	Os11g0286800	AK072702.1	-	Terpene synthase family protein	8e-2	At3g45130	LAS1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-6	54	Os01g0935700	AK069403.1	-	Cytochrome c1 (Fragment)	3e-52	At3g27240	cytochrome c1, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-25	121	Os11g0592500	AK067078.1	-	Protein phosphatase 2C-like domain containingprotein	6e-1	At4g16440	ferredoxin hydrogenase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-24	115	Os11g0302500	AK120763.1	-	Hypothetical protein	6e-7	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	38	Arabidopsis thaliana	At1g78960	844236	ATLUP2	Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-14	83	Glycine max	Gma.6863.1.S1_at	BQ628209	-	-	2e-35	At2g07050	CAS1 (cycloartenol synthase 1)	C.G.	S.X.	Please select
0.26	5e-105	383	Hordeum vulgare	Contig13511_at	Contig13511	-	-	1e-2	At3g45130	LAS1	C.G.	S.X.	Please select
0.02	6e-2	42	Populus trichocarpa	PtpAffx.219180.1.S1_at	pmrna35028	hypothetical protein	-	2e-5	At1g78955	CAMS1 (Camelliol C synthase 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	6e-32	141	Triticum aestivum	Ta.346.1.A1_at	BJ254518	-	-	2e+0	At1g78955	CAMS1 (Camelliol C synthase 1)	C.G.	S.X.	Please select
0.01	1e-2	42	Vitis vinifera	1615980_at	CD007021	-	-	1e+1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.03	8e-14	79	Zea mays	Zm.5671.1.S1_at	AI629886	cycloartenol synthase	-	4e+0	At5g23640	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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