CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0479200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os06g0479200 AK099423.1 - Hypothetical protein 2e+0 At3g04430 anac049 (Arabidopsis NAC domain containing protein 49) S.X. H.G.
0.33 38.8 Os06g0530300 9634.m03187 - Protein of unknown function DUF212 family protein 2e-3 At3g12685 - S.X. H.G.
0.20 16.5 Os08g0238700 AK068778.1 - Hypothetical protein 4e-2 At2g10550 - S.X. H.G.
0.13 8.2 Os02g0704900 AF093629.1 - Inorganic pyrophosphatase-like protein 1e-41 At2g18230 AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2) S.X. H.G.
0.08 4.2 Os07g0442000 AK068559.1 - Cyclin-like F-box domain containing protein 8e-2 At5g43770 proline-rich family protein S.X. H.G.
0.06 3.0 Os02g0726300 AB028132.1 - Dof zinc finger protein 9e-22 At2g37590 Dof-type zinc finger domain-containing protein S.X. H.G.
0.05 2.5 Os04g0683900 AK100309.1 - HMG-I and HMG-Y, DNA-binding domain containingprotein 3e-2 At3g03460 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.2 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
6.4 97.2 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.3 97.2 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.3 97.2 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
5.8 97.0 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.7 96.9 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.5 96.8 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.5 96.8 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.5 96.8 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.1 96.6 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 3e-50 200 Os12g0250900 AK119963.1 - BRCT domain containing protein 5e-1 At2g11005 glycine-rich protein C.G. S.X.
0.18 3e-10 67 Os12g0287400 9640.m01864 - - 2e-1 At4g03175 protein kinase family protein C.G. S.X.
0.10 3e-47 190 Os01g0361000 AK110594.1 - Hypothetical protein 1e+0 At1g49330 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.09 2e-27 125 Os01g0386700 AK067913.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 2e-1 At2g11005 glycine-rich protein C.G. S.X.
0.04 5e-12 73 Os05g0547700 AK120320.1 - Conserved hypothetical protein 1e+0 At2g16720 MYB7 (MYB DOMAIN PROTEIN 7) C.G. S.X.
0.04 2e-8 61 Os04g0173300 AK063632.1 - Hypothetical protein 1e-1 At3g61060 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g04430 819598 anac049 (Arabidopsis NAC domain containing protein 49) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P - - - C.G. S.X.
0.03 1e-2 42 Glycine max HgAffx.7687.1.S1_at CB824524 - - 2e-1 At4g08230 glycine-rich protein C.G. S.X.
0.03 3e-4 46 Hordeum vulgare Contig17178_at Contig17178 - - 2e-8 At2g24580 sarcosine oxidase family protein C.G. S.X.
0.02 8e-1 36 Populus trichocarpa Ptp.8011.1.S1_at BU894633 hypothetical protein - 6e+0 At5g50820 anac097 (Arabidopsis NAC domain containing protein 97) C.G. S.X.
0.04 4e-2 40 Triticum aestivum TaAffx.6011.1.S1_at CA693433 - - 1e+1 At5g20820 auxin-responsive protein-related C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1614969_at CA810356 hypothetical protein LOC100252305 - 3e+0 At4g00390 transcription regulator C.G. S.X.
0.02 3e-4 46 Zea mays Zm.10485.1.S1_at BQ528490 hypothetical protein LOC100193633 - 6e+0 At3g03150 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage