CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0478600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
0.80 94.6 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related S.X. H.G.
0.67 87.2 Os09g0363900 AK072899.1 - Mandelonitrile lyase-like protein 1e-3 At1g72970 HTH (HOTHEAD) S.X. H.G.
0.67 87.2 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein S.X. H.G.
0.63 82.7 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.57 77.0 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.46 60.9 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein S.X. H.G.
0.43 55.4 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.3 99.1 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
12.8 98.4 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
11.9 98.3 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
11.9 98.3 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
11.7 98.2 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
11.3 98.2 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.1 98.0 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
8.9 97.8 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
8.0 97.6 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.8 97.6 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-3 44 Os01g0632700 AK070692.1 - Hypothetical protein 5e+0 At5g37720 RNA and export factor-binding protein, putative C.G. S.X.
0.01 3e-2 42 Os06g0126100 AK119346.1 - - 8e-18 At5g61350 protein kinase family protein C.G. S.X.
0.01 1e-1 40 Os01g0170300 9629.m00688 - Protein kinase domain containing protein 8e-6 At1g51870 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 36 Arabidopsis thaliana At5g01380 831895 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.CL3Contig9_at PsAffx.CL3Contig9 - - 4e-1 At2g05440 glycine-rich protein C.G. S.X.
0.41 2e-99 363 Hordeum vulgare Contig17959_at Contig17959 - - 7e-1 At4g27240 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 8e-2 40 Populus trichocarpa PtpAffx.225851.1.S1_at pmrna45476 hypothetical protein - 1e-1 Atcg00680 - C.G. S.X.
0.37 2e-106 387 Triticum aestivum TaAffx.23911.1.S1_at CA728428 - - 1e+0 At5g65830 leucine-rich repeat family protein C.G. S.X.
0.01 2e+1 30 Vitis vinifera 1620677_at BQ797428 hypothetical protein LOC100257709 - 1e+0 At4g20440 smB (small nuclear ribonucleoprotein associated protein B) C.G. S.X.
0.20 3e-51 202 Zea mays Zm.15673.1.A1_at CO521248 hypothetical protein LOC100191542 - 7e+0 At2g32650 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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