CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0476000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os06g0476000 9634.m02689 - - 3e+0 At3g17090 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
0.77 93.1 Os10g0571900 NM_197841.1 - RmlC-like cupin family protein 3e+0 At2g13980 nucleic acid binding S.X. H.G.
0.73 91.1 Os07g0690800 9635.m04962 - - 3e-1 At1g47380 protein phosphatase 2C-related / PP2C-related S.X. H.G.
0.50 68.0 Os02g0590700 AK100917.1 - Conserved hypothetical protein 4e-2 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) S.X. H.G.
0.50 68.0 Os02g0598600 AK105564.1 - Cyclin-like F-box domain containing protein 6e-1 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.43 55.4 Os08g0527900 9636.m04228 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 3e-1 At3g49540 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.6 99.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
35.6 99.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.6 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.7 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.9 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.5 99.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 4e-7 57 Os05g0281700 9633.m01850 - - 2e+0 At4g38390 unknown protein C.G. S.X.
0.01 4e-1 38 Os04g0670600 AK065924.1 - Exostosin-like family protein 6e-34 At1g34270 exostosin family protein C.G. S.X.
0.01 2e+0 36 Os01g0177200 AK103230.1 - Ubiquitin-specific protease 14 3e-11 At3g20630 UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) C.G. S.X.
0.01 2e+0 36 Os01g0836400 AK068741.1 - SAC3/GANP family protein 1e+0 At3g48630 unknown protein C.G. S.X.
0.00 4e-1 38 Os03g0721200 AK065408.1 - ARM repeat fold domain containing protein 2e-49 At1g64790 binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e+0 34 Arabidopsis thaliana At3g17090 820966 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:endomembrane system, protein serine/threonine phosphatase complex;PMOFBV - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.93190.1.S1_s_at CF808915 - - 5e-68 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig14890_at Contig14890 - - 5e-2 At2g18320 - C.G. S.X.
0.02 7e-2 40 Populus trichocarpa PtpAffx.33993.1.A1_a_at DN492265 copper transporter - 1e-7 At3g46900 COPT2 C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.50491.1.S1_at CA738999 - - 9e+0 At5g41910 RNA polymerase II mediator complex protein-related C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1617584_s_at CF211103 hypothetical protein LOC100265140 - 4e+0 At5g40620 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.7965.1.A1_at BM074125 hypothetical protein LOC100277125 - 3e-1 At5g27440 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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