CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0347700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.1 Os06g0347700 9634.m02365 - - 5e-4 At4g37940 AGL21 S.X. H.G.
0.27 27.5 Os04g0491500 AK101116.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-2 At4g21680 proton-dependent oligopeptide transport (POT) family protein S.X. H.G.
0.27 27.5 Os05g0466100 AK108647.1 - CCT domain containing protein 7e-1 At5g07600 oleosin / glycine-rich protein S.X. H.G.
0.13 8.2 Os08g0332600 9636.m02387 - Disease resistance protein family protein 1e+0 At5g25600 - S.X. H.G.
0.05 2.5 Os08g0401100 AK121508.1 - Ankyrin repeat containing protein 5e+0 At3g31401 unknown protein S.X. H.G.
0.04 2.0 Os08g0151300 AK111808.1 - Myb, DNA-binding domain containing protein 2e-20 At1g63910 AtMYB103 (myb domain protein 103) S.X. H.G.
0.01 0.5 Os03g0282100 9631.m01705 - - 3e-1 At3g55090 ATPase, coupled to transmembrane movement of substances S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
36.5 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.8 99.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 5e-30 131 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.30 1e-30 133 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.30 3e-19 95 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.29 2e-14 79 Os03g0186600 AY345222.1 - Transcription factor, MADS-box domain containingprotein 1e-4 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.18 2e-14 79 Os04g0304400 AK102927.1 - MADS-box protein AGL16-II 6e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-4 44 Arabidopsis thaliana At4g37940 829950 AGL21 encodes a MADS box protein, highly expressed in the root. - - - C.G. S.X.
0.07 2e-1 36 Glycine max GmaAffx.9006.2.S1_at BG789532 - - 2e-4 At4g24540 AGL24 (AGAMOUS-LIKE 24) C.G. S.X.
0.14 7e-26 115 Hordeum vulgare Contig24884_at Contig24884 - - 1e-1 At5g10140 FLC (FLOWERING LOCUS C) C.G. S.X.
0.13 4e-2 38 Populus trichocarpa PtpAffx.43839.1.S1_at DN501305 hypothetical protein - 3e-23 At4g09960 STK (SEEDSTICK) C.G. S.X.
0.23 3e-11 67 Triticum aestivum Ta.27569.1.A1_at CD890142 MADS-box transcription factor TaAGL35 - 8e-2 At5g51870 AGL71 (AGAMOUS-LIKE 71) C.G. S.X.
0.07 3e-2 36 Vitis vinifera 1619977_at BQ794993 hypothetical protein LOC100251508 - 3e-27 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.15 2e-25 113 Zea mays Zm.524.1.S1_at AF112149.1 MADS box protein 2 - 6e-17 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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