CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0320200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.51 68.7 Os06g0320200 9634.m02112 - Beta-primeverosidase (EC 3.2.1.149) 2e-4 At3g09260 PYK10 S.X. H.G.
0.29 31.1 Os04g0160600 9632.m00696 - - 2e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.25 24.1 Os05g0565100 AK063277.1 - Cytochrome b561 / ferric reductase transmembranedomain containing protein 4e-2 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) S.X. H.G.
0.22 19.4 Os10g0483400 AK120835.1 - Protein kinase domain containing protein 7e-5 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.18 13.7 Os01g0923200 AK060288.1 - Conserved hypothetical protein 1e-9 At3g01940 unknown protein S.X. H.G.
0.17 12.6 Os06g0160600 NM_185619.1 - Plant protein of unknown function family protein 3e+0 At4g16750 DRE-binding transcription factor, putative S.X. H.G.
0.09 4.9 Os12g0414500 AK110880.1 - contains InterPro domain(s): IPR004364, IPR008994 3e-1 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) S.X. H.G.
0.06 3.0 Os02g0761100 AK070404.1 - Cyclophilin-40 (Expressed protein) 2e-29 At2g15790 SQN (SQUINT) S.X. H.G.
0.05 2.5 Os03g0306400 AY183658.1 - Mitochondrial ATP-dependent protease Lon precursor 2e-15 At5g26860 LON1 (LON PROTEASE 1) S.X. H.G.
0.04 2.0 Os07g0471900 9635.m02810 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At3g63350 AT-HSFA7B S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.7 99.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.3 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
16.8 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-10 69 Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.09 6e-6 54 Os04g0474600 9632.m03783 - Beta-primeverosidase (EC 3.2.1.149) 5e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.07 1e-10 69 Os08g0509200 AK067001.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 1e+0 At2g03020 heat shock protein-related C.G. S.X.
0.07 6e-6 54 Os04g0474500 AK073031.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 7e-2 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.03 4e-7 57 Os06g0683300 AK068614.1 - Beta-glucosidase 1e-10 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-4 48 Arabidopsis thaliana At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. - - - C.G. S.X.
0.12 1e-3 46 Glycine max GmaAffx.92564.1.S1_at CF808289 - - 4e-5 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.03 9e-2 38 Hordeum vulgare Contig2737_at Contig2737 - - 9e-1 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) C.G. S.X.
0.06 7e-5 50 Populus trichocarpa PtpAffx.203696.1.S1_at pmrna7321 - - 2e-19 At4g21760 BGLU47 (Beta-glucosidase 47) C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.23909.1.S1_at BJ292155 - - 8e-1 At3g18080 BGLU44 (B-S GLUCOSIDASE 44) C.G. S.X.
0.04 9e-7 54 Vitis vinifera 1620808_at AY039034.1 beta-glucosidase - 4e-10 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.02 8e-2 38 Zea mays Zm.4415.1.A1_at BM080841 hypothetical protein LOC100274900 - 5e-3 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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