CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0302000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein S.X. H.G.
0.95 99.6 Os11g0306400 AK106179.1 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein S.X. H.G.
0.67 87.2 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein S.X. H.G.
0.62 81.5 Os03g0306700 AK109929.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) S.X. H.G.
0.61 81.2 Os11g0307300 9639.m01888 - Herbicide safener binding protein 6e-1 At3g16190 isochorismatase hydrolase family protein S.X. H.G.
0.55 73.7 Os08g0297800 AK058698.1 - Sulfotransferase family protein 7e-4 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) S.X. H.G.
0.53 71.3 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
0.52 69.6 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) S.X. H.G.
0.50 68.0 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein S.X. H.G.
0.48 63.7 Os06g0500700 9634.m02934 - Cytochrome P450 family protein 1e-2 At3g26300 CYP71B34 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.7 99.9 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
44.9 99.9 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
35.5 99.8 GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
31.9 99.7 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
30.9 99.7 GSM262008 IAC165, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
28.3 99.6 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
18.6 99.0 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
18.6 99.0 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.1 98.8 GSM262002 IAC165, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.1 98.7 GSM262003 IAC165, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-38 163 Os01g0710600 NM_191699.1 - - 4e+0 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.08 8e-44 180 Os07g0501400 9635.m03118 - - 7e-1 At1g08700 presenilin family protein C.G. S.X.
0.03 1e-13 79 Os06g0281800 AK064437.1 - BURP domain containing protein 1e-2 At5g25610 RD22 C.G. S.X.
0.02 7e-6 54 Os08g0496800 AK120942.1 - RAFTIN1a protein (RAFTIN1a anther protein) 2e-1 At5g19875 unknown protein C.G. S.X.
0.02 2e-3 46 Os06g0158100 9634.m00564 - WRKY transcription factor 63 2e-7 At5g24110 WRKY30 C.G. S.X.
0.01 2e-3 46 Os02g0671200 CB645317 - Conserved hypothetical protein 5e+0 At2g34910 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At1g06475 2745744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.CL587Contig1_at PsAffx.CL587Contig1 - - 1e+0 At1g19960 - C.G. S.X.
0.23 3e-20 99 Hordeum vulgare Contig11252_at Contig11252 - - 2e+0 At1g01130 unknown protein C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.32500.2.S1_s_at CV241914 hypothetical protein - 2e-1 At5g34581 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.25 1e-15 85 Triticum aestivum Ta.5458.2.S1_x_at CA608843 - - 2e+1 At5g23900 60S ribosomal protein L13 (RPL13D) C.G. S.X.
0.01 4e+0 32 Vitis vinifera 1616366_at CF215144 hypothetical protein LOC100251921 - 3e-21 At3g53500 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.10 2e-12 73 Zea mays Zm.265.1.A1_at U38791.1 hypothetical protein LOC100279974 - 5e+0 At5g62040 brother of FT and TFL1 protein (BFT) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage