CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0300800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os06g0300800 AK111728.1 - The start codon is not identified. 2e-6 At3g13290 VCR (VARICOSE-RELATED) S.X. H.G.
0.73 91.1 Os06g0105900 AK062140.1 - Conserved hypothetical protein 1e-4 At4g01290 unknown protein S.X. H.G.
0.63 82.7 Os08g0109500 AK120789.1 - Bromodomain containing protein 2e-5 At1g58025 DNA binding S.X. H.G.
0.56 76.3 Os11g0157100 AK120409.1 - Cyclin domain containing protein 4e-22 At4g19600 CYCT1 S.X. H.G.
0.55 73.7 Os03g0794800 AK058269.1 - XRN3 2e-25 At1g54490 XRN4 (EXORIBONUCLEASE 4) S.X. H.G.
0.40 51.1 Os03g0165600 AK062304.1 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 3e-1 At3g47890 ubiquitin thiolesterase/ zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 96.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.4 96.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.2 96.0 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
4.0 95.9 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.9 95.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.5 95.3 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 0 878 Os02g0722800 AK122035.1 - WD40-like domain containing protein 4e-8 At3g13300 VCS (VARICOSE) C.G. S.X.
0.01 2e-2 44 Os02g0176700 9630.m00757 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 4e-47 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.01 2e-2 44 Os03g0803600 9631.m05795 - Glycosyl transferase, family 31 protein 2e-8 At1g74800 galactosyltransferase family protein C.G. S.X.
0.01 2e-2 44 Os05g0574600 AK070754.1 - Fatty acid elongase 1-like protein 3e-13 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.01 2e-2 44 Os10g0478100 AK072265.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 7e-1 At5g60460 sec61beta family protein C.G. S.X.
0.01 7e-2 42 Os11g0269000 9639.m01518 - - 7e-21 At3g48870 HSP93-III C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-6 56 Arabidopsis thaliana At3g13290 820529 VCR (VARICOSE-RELATED) F:nucleotide binding;P:unknown;C:cellular_component unknown;MBOFPA - - - C.G. S.X.
0.04 9e-7 57 Glycine max Gma.15608.1.S1_at CA782726 - - 4e-8 At3g13300 VCS (VARICOSE) C.G. S.X.
0.21 2e-144 513 Hordeum vulgare Contig15885_at Contig15885 - - 3e+0 At3g44230 unknown protein C.G. S.X.
0.06 1e-8 63 Populus trichocarpa PtpAffx.201485.1.S1_at pmrna2919 hypothetical protein - 7e-25 At3g13300 VCS (VARICOSE) C.G. S.X.
0.19 4e-122 440 Triticum aestivum TaAffx.106894.1.S1_at CA639698 - - 2e+0 At5g64180 unknown protein C.G. S.X.
0.05 2e-1 38 Vitis vinifera 1618977_at CB969477 hypothetical protein LOC100241190 - 4e-1 At4g18720 transcription elongation factor-related C.G. S.X.
0.12 8e-26 119 Zea mays Zm.5067.1.A1_at CF057843 - - 8e-1 At3g55254 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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