Gene omics information

Query gene ID	Os06g0299300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.7	Os06g0299300	AK060501.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os07g0159700	9635.m00597	-	Protein kinase domain containing protein	3e-2	At3g17420	GPK1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os03g0310000	AK060625.1	-	Lipolytic enzyme, G-D-S-L family protein	5e-11	At5g18430	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os05g0454200	AK101945.1	-	Protein of unknown function DUF315 domaincontaining protein	1e-15	At4g38430	ROPGEF1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os04g0677200	AK107505.1	-	Leucine-rich repeat, plant specific containingprotein	5e-2	At3g12610	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os10g0508000	9638.m03238	-	Multicopper oxidase, type 1 family protein	2e-4	At3g13400	sks13 (SKU5 Similar 13)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	Os12g0274200	AK063071.1	-	Lipolytic enzyme, G-D-S-L family protein	8e-6	At1g71691	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.7	99.4	GSM99858	TCHW P1_m103 control, biological rep1	GSE4438	Expression data from rice under salinity stress
10.8	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.1	97.9	GSM99862	TCHW P5_m103 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress
9.0	97.8	GSM99860	TCHW P3_m103 control, biological rep3	GSE4438	Expression data from rice under salinity stress
8.5	97.7	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM99861	TCHW P4_m103 salt stress, biological rep1	GSE4438	Expression data from rice under salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	1e-92	341	Os06g0299200	9634.m01889	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e+0	At5g65210	TGA1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	2e-175	617	Os06g0299100	AK066533.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	3e+0	At5g41908	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	7e-73	276	Os06g0300000	AK109790.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	7e-1	At3g27280	ATPHB4 (PROHIBITIN 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	2e-39	165	Os06g0300200	9634.m01897	-	-	2e+0	At3g09500	60S ribosomal protein L35 (RPL35A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	2e-20	101	Os04g0116600	AK064965.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	4e+0	At2g20870	cell wall protein precursor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	5e-12	73	Os06g0299600	9634.m01892	-	-	2e+0	At5g02220	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	3e-4	48	Os11g0432600	AK059916.1	-	Beta-ketoacyl reductase GL8B	3e+0	At4g31580	SRZ-22	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-4	48	Os04g0483500	AK060512.1	-	B-keto acyl reductase	1e+1	At5g44585	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g49580	824120	LSU1 (RESPONSE TO LOW SULFUR 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	GmaAffx.78446.1.S1_at	BQ080009	-	-	3e+0	At2g47340	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.35	1e-65	250	Hordeum vulgare	Contig15141_at	Contig15141	-	-	6e-1	At5g66380	ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1)	C.G.	S.X.	Please select
0.03	3e+0	34	Populus trichocarpa	PtpAffx.220592.1.S1_at	pmrna36997	hypothetical protein	-	1e+1	At5g28660	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-16	87	Triticum aestivum	Ta.12277.1.A1_at	BQ170905	-	-	2e+1	At5g02560	HTA12	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1614322_at	CB834359	-	-	3e-1	At5g17460	unknown protein	C.G.	S.X.	Please select
0.06	7e-2	38	Zea mays	Zm.351.1.S1_at	U89509.2	b-keto acyl reductase	-	5e-5	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0008152	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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