Gene omics information

Query gene ID	Os06g0288200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os06g0288200	AK071127.1	-	Hypothetical protein	8e-1	At2g47400	CP12-1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.91	98.9	Os06g0102100	AK099468.1	-	Cytochrome P450 family protein	1e+0	At5g46020	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.91	98.9	Os07g0510500	AK068586.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	4e-3	At3g21800	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os02g0697400	AK105636.1	-	4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)(4-coumaroyl-CoA synthase 2)	8e-5	At1g65060	4CL3	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os02g0589000	AK066288.1	-	Lecithin:cholesterol acyltransferase familyprotein	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os12g0115700	AK099443.1	-	Chalcone-flavanone isomerase family protein	3e+0	At4g04745	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.5	99.0	GSM421720	MOCK, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.3	98.9	GSM421701	XOO, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.2	98.9	GSM421719	MOCK, 24 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.8	98.9	GSM421681	XOC, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.3	98.8	GSM421721	MOCK, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.3	98.8	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
15.0	98.6	GSM421700	XOO, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.6	98.6	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
13.8	98.5	GSM421680	XOC, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.3	98.4	GSM421679	XOC, 24 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	3e-57	224	Os06g0289200	AK106250.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	3e+0	At1g77932	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	5e-13	77	Os02g0242100	9630.m01355	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-5	At5g26310	UGT72E3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	1e-22	109	Os01g0941000	NM_189710.1	-	-	4e-5	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	1e-10	69	Os03g0643800	9631.m04264	-	-	4e+0	At2g07820	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-9	65	Os09g0372000	9637.m01759	-	-	2e+0	At5g24660	LSU2 (RESPONSE TO LOW SULFUR 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-14	81	Os02g0203200	AK120020.1	-	Conserved hypothetical protein	9e-1	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-10	69	Os02g0243300	AK105563.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	4e-6	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At2g47400	819353	CP12-1	CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-2	42	Glycine max	GmaAffx.1999.1.S1_at	CA783247	-	-	2e-11	At1g10400	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.17	1e-10	67	Hordeum vulgare	Contig9823_at	Contig9823	-	-	5e-1	At5g28781	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	38	Populus trichocarpa	PtpAffx.118614.2.S1_at	CV265529	hypothetical protein	-	1e-10	At4g36980	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	7e-23	109	Triticum aestivum	Ta.29432.1.S1_at	BJ215997	-	-	1e-2	At1g05530	UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2)	C.G.	S.X.	Please select
0.03	1e-2	40	Vitis vinifera	1608932_at	CB982469	hypothetical protein LOC100248024	-	7e-2	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	C.G.	S.X.	Please select
0.13	6e-6	52	Zea mays	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0008152	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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