CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0283300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os06g0283300 9634.m01742 - Serine/threonine protein kinase family protein 1e-4 At5g15730 serine/threonine protein kinase, putative S.X. H.G.
0.44 58.1 Os04g0417800 AK067483.1 - Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein 2e-5 At3g15470 WD-40 repeat family protein S.X. H.G.
0.40 51.1 Os01g0695200 AK064145.1 - Conserved hypothetical protein 9e-7 At5g14550 unknown protein S.X. H.G.
0.22 19.4 Os11g0160500 AY224425.1 - BZIP-like protein 8e-11 At1g43700 VIP1 (VIRE2-INTERACTING PROTEIN 1) S.X. H.G.
0.19 15.1 Os01g0919500 AK059108.1 - Zn-finger, RING domain containing protein 2e+0 At2g01260 unknown protein S.X. H.G.
0.15 10.3 Os03g0138000 AK069986.1 - TPR-like domain containing protein 2e-2 At3g26180 CYP71B20 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.5 98.3 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
11.6 98.2 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
9.4 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.3 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.1 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 0 4096 Os06g0283200 AK073829.1 - Zn-finger-like, PHD finger domain containingprotein 1e+0 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative C.G. S.X.
0.01 1e-3 48 Os01g0204100 NM_188329.1 - - 7e-5 At3g58690 protein kinase family protein C.G. S.X.
0.01 4e-3 46 Os01g0231600 9629.m01278 - - 7e-7 At4g32780 phosphoinositide binding C.G. S.X.
0.01 4e-3 46 Os04g0393900 AK063305.1 - Protein kinase domain containing protein 2e-23 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
0.01 4e-3 46 Os07g0157700 AK069862.1 - Conserved hypothetical protein 2e-5 At3g49960 peroxidase, putative C.G. S.X.
0.01 4e-3 46 Os09g0349800 9637.m01547 - Protein kinase domain containing protein 1e+0 At5g66710 protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 50 Arabidopsis thaliana At5g15730 831429 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA - - - C.G. S.X.
0.02 5e-8 61 Glycine max GmaAffx.76995.1.S1_at BG507675 - - 1e-7 At5g15730 serine/threonine protein kinase, putative C.G. S.X.
0.04 2e-11 71 Hordeum vulgare Contig15956_at Contig15956 - - 7e-1 At4g00130 - C.G. S.X.
0.09 7e-4 48 Populus trichocarpa PtpAffx.216911.1.S1_at pmrna31978 hypothetical protein - 5e-23 At5g15730 serine/threonine protein kinase, putative C.G. S.X.
0.23 1e-109 398 Triticum aestivum TaAffx.20965.1.S1_at CA691107 - - 2e-3 At5g15730 serine/threonine protein kinase, putative C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1620258_at AY427195.1 - - 2e-2 At1g14370 APK2A (PROTEIN KINASE 2A) C.G. S.X.
0.01 2e-1 38 Zea mays Zm.3445.1.S1_at BI388892 hypothetical protein LOC100278372 - 4e+0 At4g08230 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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