CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0277500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os06g0277500 NM_196635.1 - - 6e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) S.X. H.G.
0.23 21.2 Os06g0645600 9634.m04231 - Conserved hypothetical protein 3e+0 At1g56530 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.15 10.3 Os02g0738300 AK108113.1 - Conserved hypothetical protein 1e-1 At4g14695 unknown protein S.X. H.G.
0.07 3.7 Os03g0388950 9633.m02831 - - 2e-2 At1g58150 unknown protein S.X. H.G.
0.07 3.7 Os03g0636200 9631.m04195 - - 2e+0 At1g29060 - S.X. H.G.
0.07 3.7 Os01g0609800 NM_192729.1 - - 2e-2 At1g58150 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.8 99.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.7 99.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.5 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.1 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.2 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.0 99.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.6 99.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 950 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein C.G. S.X.
0.24 2e-33 143 Os06g0563100 9634.m03495 - - 2e-1 At4g30460 glycine-rich protein C.G. S.X.
0.10 8e-33 141 Os05g0114700 AK111634.1 - Myb, DNA-binding domain containing protein 7e-5 At4g38620 MYB4 C.G. S.X.
0.03 3e-6 54 Os10g0411000 CB678786 - - 8e+0 At5g65300 unknown protein C.G. S.X.
0.03 5e-3 42 Os07g0244600 9635.m01398 - Hypothetical protein 2e-3 At2g04190 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+1 30 Arabidopsis thaliana At4g11660 826771 AT-HSFB2B member of Heat Stress Transcription Factor (Hsf) family - - - C.G. S.X.
0.05 6e-2 38 Glycine max PsAffx.psHA002iD05r_s_at PsAffx.psHA002iD05r - - 9e-1 At4g21790 TOM1 (TOBAMOVIRUS MULTIPLICATION 1) C.G. S.X.
0.07 1e-3 42 Hordeum vulgare rbaal1i09_at rbaal1i09 - - 8e-1 At4g27900 - C.G. S.X.
0.03 9e-1 34 Populus trichocarpa PtpAffx.215284.1.S1_at pmrna29378 hypothetical protein - 6e+0 At5g17040 UDP-glucoronosyl/UDP-glucosyl transferase family protein C.G. S.X.
0.05 7e-1 34 Triticum aestivum TaAffx.58970.1.S1_at CA611111 - - 9e-1 Atmg00690 - C.G. S.X.
0.03 3e+0 30 Vitis vinifera 1618782_at CF414723 hypothetical protein LOC100261432 - 1e-24 At2g44350 ATCS C.G. S.X.
0.03 3e-1 34 Zea mays Zm.13245.1.S1_at AF450481.1 CBF3-like protein - 2e+0 At3g22800 leucine-rich repeat family protein / extensin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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