CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0251200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os06g0251200 AK067034.1 - MATH domain containing protein 1e+0 At5g46530 - S.X. H.G.
0.46 60.9 Os01g0347100 CA763426 - Protein of unknown function DUF1399 family protein 5e-3 At1g56230 unknown protein S.X. H.G.
0.40 51.1 Os01g0901800 AK070266.1 - Protein of unknown function DUF212 family protein 7e-6 At1g67600 - S.X. H.G.
0.38 46.9 Os04g0590400 AK100784.1 - GRAS transcription factor domain containingprotein 6e-6 At1g07520 scarecrow transcription factor family protein S.X. H.G.
0.12 7.2 Os12g0641100 AK100537.1 - Sodium/hydrogen exchanger family protein 8e-2 At1g14660 ATNHX8 S.X. H.G.
0.10 5.7 Os04g0672100 AK121689.1 - Phytosulfokine receptor precursor (EC 2.7.1.37)(Phytosulfokine LRR receptor kinase) 2e-3 At5g62230 ERL1 (ERECTA-LIKE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.7 98.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.2 97.7 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.0 97.4 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.8 97.3 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.3 97.2 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.9 97.0 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.3 96.7 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.3 96.7 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.3 96.7 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.2 96.7 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-4 48 Os10g0436100 9638.m02565 - - 5e-1 At2g35300 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein C.G. S.X.
0.02 8e-3 44 Os10g0436700 NM_196664.1 - - 1e-1 At3g01390 VMA10 (VACUOLAR MEMBRANE ATPASE 10) C.G. S.X.
0.02 3e-2 42 Os04g0293700 AK106564.1 - Conserved hypothetical protein 2e-1 At1g49880 Erv1/Alr family protein C.G. S.X.
0.02 1e-1 40 Os10g0429300 9638.m02507 - MATH domain containing protein 2e+0 At2g34870 MEE26 (maternal effect embryo arrest 26) C.G. S.X.
0.01 8e-3 44 Os10g0435400 AK106669.1 - MATH domain containing protein 4e-1 At3g01390 VMA10 (VACUOLAR MEMBRANE ATPASE 10) C.G. S.X.
0.01 5e-1 38 Os02g0309200 9630.m01972 - - 3e+0 At5g05365 metal ion binding C.G. S.X.
0.01 5e-1 38 Os03g0732800 AK107908.1 - Homeodomain-like containing protein 4e-6 At4g36870 BLH2 (BEL1-LIKE HOMEODOMAIN 2) C.G. S.X.
0.01 5e-1 38 Os08g0130000 9636.m00276 - Conserved hypothetical protein 1e-11 At2g04305 magnesium transporter CorA-like protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At5g46530 834696 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P - - - C.G. S.X.
0.01 3e-1 38 Glycine max GmaAffx.33483.1.A1_at BU551275 - - 1e+0 At3g28170 unknown protein C.G. S.X.
0.05 4e-17 89 Hordeum vulgare Contig17820_at Contig17820 - - 3e+0 At5g19000 ATBPM1 (BTB-POZ and MATH domain 1) C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.17219.1.A1_at BU817448 - - 5e+0 At5g47650 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) C.G. S.X.
0.08 3e-4 48 Triticum aestivum Ta.11757.1.S1_at CD902249 - - 2e+0 At1g53850 PAE1 C.G. S.X.
0.02 5e-3 42 Vitis vinifera 1609585_at CF513261 - - 9e-1 At3g59690 IQD13 (IQ-domain 13) C.G. S.X.
0.03 4e-4 46 Zea mays Zm.12386.1.A1_at CF630849 speckle-type POZ protein - 7e+0 At3g44935 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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