Gene omics information

Query gene ID	Os06g0222400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	91.1	Os06g0222400	AK063886.1	-	Hypothetical protein	2e-3	At5g46780	VQ motif-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os06g0650600	AK066545.1	-	Nonaspanin (TM9SF) family protein	1e-34	At3g13772	endomembrane protein 70, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os01g0778800	AK100383.1	-	Peptidase M16, C-terminal domain containingprotein	7e-9	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os11g0140400	9640.m00336	-	Calcium-translocating P-type ATPase, PMCA-typefamily protein	2e-24	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os05g0120700	AK062874.1	-	Cation transporting ATPase, C-terminal domaincontaining protein	2e-23	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os04g0605100	AK072938.1	-	WRKY transcription factor 68	7e-22	At4g31550	WRKY11	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.2	98.4	GSM195220	stigma 3, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
11.7	98.2	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
10.9	98.1	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
10.1	98.0	GSM262020	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.7	97.8	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.9	97.6	GSM262019	Nipponbare, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.7	97.6	GSM261998	IAC165, 2 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.6	97.5	GSM262008	IAC165, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.2	97.4	GSM262004	IAC165, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.0	97.4	GSM262009	IAC165, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-47	190	Os02g0752800	AK105877.1	-	Dehydration responsive element binding protein 2B(DREB2B protein)	7e-5	At2g22200	AP2 domain-containing transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	2e-39	165	Os09g0369000	AK070758.1	-	AP2 domain transcription factor RAP2.3 (Related toAP2 protein 3) (Cadmium-induced protein AS30)	3e-4	At1g71130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6e-36	153	Os08g0408500	AK068312.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	2e-1	At1g53170	ERF8	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-32	141	Os03g0257700	AK110865.1	-	Hypothetical protein	2e-1	At2g32060	40S ribosomal protein S12 (RPS12C)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-4	48	Os03g0191900	9631.m00866	-	AP2 domain family transcription factor homolog(AP2 domain transcription factor) (ABI4:abscisicacid-insensitive 4 ) (ABI4)	4e-2	At1g71130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	8e-4	46	Os04g0559800	AK065413.1	-	Mitogen-activated protein kinase	9e-52	At1g63700	YDA (YODA)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	44	Arabidopsis thaliana	At5g46780	834721	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	6e-10	65	Glycine max	GmaAffx.41468.1.A1_at	BI967653	-	-	1e+1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.38	9e-19	93	Hordeum vulgare	HP01H17w_at	HP01H17w	-	-	3e-1	At4g09270	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	44	Populus trichocarpa	PtpAffx.225115.1.S1_x_at	pmrna44224	hypothetical protein	-	7e+0	At5g06230	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	5e-16	85	Triticum aestivum	Ta.1626.1.S1_at	BE443219	-	-	7e-2	At1g63855	unknown protein	C.G.	S.X.	Please select
0.11	6e-28	123	Vitis vinifera	1621235_s_at	CB982868	-	-	1e+1	At5g53030	unknown protein	C.G.	S.X.	Please select
0.18	3e-15	81	Zea mays	Zm.13842.1.A1_at	AY104042.1	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006355	Any process that modulates the frequency, rate or extent of DNA-dependent transcription.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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