CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0219300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 91.9 Os06g0219300 9634.m01132 - - 5e+0 At5g03550 - S.X. H.G.
0.21 17.9 Os11g0431200 9639.m02145 - - 3e-1 At2g05915 unknown protein S.X. H.G.
0.14 9.3 Os10g0433800 NM_196640.1 - - 1e+0 At2g44690 ARAC9 S.X. H.G.
0.13 8.2 Os03g0410100 9631.m02889 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 2e-4 At4g00690 ULP1B (UB-LIKE PROTEASE 1B) S.X. H.G.
0.12 7.2 Os08g0376800 9636.m02863 - - 7e+0 At5g03200 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.12 7.2 Os04g0672700 AK102863.1 - Protein prenyltransferase domain containingprotein 2e+0 At5g64130 - S.X. H.G.
0.10 5.7 Os04g0483800 9632.m03874 - - 3e+0 At5g12323 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.7 99.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.1 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.5 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.4 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.2 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-15 83 Os07g0109500 NM_186164.1 - Ribosomal protein L13 family protein 1e-16 At3g07110 60S ribosomal protein L13A (RPL13aA) C.G. S.X.
0.05 4e-2 40 Os01g0388500 CF294425 - Conserved hypothetical protein 3e+0 At5g47710 C2 domain-containing protein C.G. S.X.
0.01 1e-1 38 Os02g0286700 9630.m01749 - Disease resistance protein family protein 3e-1 At2g17880 DNAJ heat shock protein, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At5g03550 831790 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psML005xN01f_at PsAffx.psML005xN01f - - 3e+0 At2g01080 - C.G. S.X.
0.03 9e+0 30 Hordeum vulgare HD08E04r_at HD08E04r - - 1e+0 At2g42360 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa Ptp.7714.1.S1_at BU865111 - - 3e+0 At2g46735 unknown protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum Ta.3297.1.S1_at BJ209818 - - 1e+0 At4g09270 unknown protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1610346_at CF517350 hypothetical protein LOC100264751 - 2e+1 At5g62065 lipid binding C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.406.5.A1_at AI670502 - - 2e-1 At2g41760 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage