CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0217900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related S.X. H.G.
0.60 79.7 Os01g0914400 AK063138.1 - Conserved hypothetical protein 6e-3 At4g12970 unknown protein S.X. H.G.
0.60 79.7 Os04g0525700 AK105830.1 - Peptidase S10, serine carboxypeptidase familyprotein 2e-1 At5g23210 SCPL34 S.X. H.G.
0.40 51.1 Os03g0320800 AK103265.1 - Protein kinase domain containing protein 3e-2 At4g34670 40S ribosomal protein S3A (RPS3aB) S.X. H.G.
0.33 38.8 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
0.17 12.6 Os09g0557900 AK107999.1 - Plastocyanin-like domain containing protein 3e+0 At2g41600 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.7 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
12.8 98.4 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
10.7 98.1 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
10.6 98.1 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
10.3 98.1 GSM99863 TCHW P6_m103 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
9.8 98.0 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
9.7 98.0 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.4 97.9 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.4 97.9 GSM99866 TCHW P9_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 40 Os09g0382300 9637.m01847 - Cyclin, C-terminal domain containing protein 1e-1 At1g70210 CYCD1 C.G. S.X.
0.04 4e-1 38 Os07g0620800 AK063671.1 - Cyclin, N-terminal domain containing protein 2e-1 At3g44750 HDA3 (HISTONE DEACETYLASE 3) C.G. S.X.
0.01 2e+0 36 Os01g0367500 9629.m02574 - - 7e-1 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
0.01 2e+0 36 Os03g0356700 AK103910.1 - Villin 3 4e-38 At2g41740 VLN2 (VILLIN 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At4g14520 827099 DNA-directed RNA polymerase II-related Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit, NRPB7 (At5g59180) - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.39477.1.S1_at BE659886 - - 4e-1 At5g45880 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.12 1e-16 87 Hordeum vulgare Contig11870_at Contig11870 - - 7e-1 At1g70210 CYCD1 C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.15982.1.A1_at AY302062.1 - - 4e+0 At5g65420 CYCD4 C.G. S.X.
0.08 7e-14 79 Triticum aestivum Ta.21873.1.S1_at AF512432.1 cyclin D2 - 4e+0 At5g10440 CYCD4 C.G. S.X.
0.01 6e-2 38 Vitis vinifera 1615211_at BQ797462 hypothetical protein LOC100267901 - 3e-8 At2g26280 CID7 C.G. S.X.
0.12 3e-20 99 Zea mays Zm.1141.1.A1_at AF351189.1 D-type cyclin - 1e-3 At2g22490 CYCD2 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage