CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0182500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.1 Os06g0182500 AK069056.1 - Ubiquitin interacting motif domain containingprotein 1e-6 At4g36860 zinc ion binding S.X. H.G.
0.44 58.1 Os02g0516600 AK068618.1 - Zn-finger, RING domain containing protein 5e-3 At3g26730 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.34 40.0 Os06g0654000 AK067618.1 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 1e-13 At2g24640 UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19) S.X. H.G.
0.32 36.3 Os01g0232400 AK106519.1 - VHS domain containing protein 2e-2 At3g16270 - S.X. H.G.
0.29 31.1 Os08g0499200 AK120828.1 - Cl- channel, voltage gated family protein 1e-65 At1g55620 CLC-F (CHLORIDE CHANNEL F) S.X. H.G.
0.29 31.1 Os05g0511400 AK101120.1 - Protein kinase GhCLK1 (Fragment) 3e-41 At4g14350 protein kinase family protein S.X. H.G.
0.28 31.1 Os08g0128300 AK103383.1 - - 1e-9 At1g13180 DIS1 (DISTORTED TRICHOMES 1) S.X. H.G.
0.26 25.6 Os06g0715000 AK107114.1 - Hypothetical protein 2e-1 At4g09770 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.25 24.1 Os11g0114700 AK070834.1 - PAP/25A core domain containing protein 4e-23 At3g51620 - S.X. H.G.
0.23 21.2 Os02g0758100 AK064259.1 - LMBR1-like conserved region domain containingprotein 2e-30 At5g65290 LMBR1 integral membrane family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.1 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
7.9 97.6 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.4 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.4 96.8 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
5.0 96.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
4.3 96.1 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-10 69 Os03g0626600 AK066665.1 - The start codon is not identified. 8e-14 At4g36860 zinc ion binding C.G. S.X.
0.12 7e-19 97 Os12g0596800 AK065760.1 - Ubiquitin interacting motif domain containingprotein 1e-12 At4g36860 zinc ion binding C.G. S.X.
0.01 1e-1 40 Os01g0251400 AU082531 - Hypothetical protein 1e-1 At1g08970 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) C.G. S.X.
0.01 1e-1 40 Os01g0727900 AK102017.1 - Conserved hypothetical protein 6e-1 At2g26880 AGL41 (AGAMOUS-LIKE 41) C.G. S.X.
0.01 5e-1 38 Os09g0492800 9637.m02797 - - 1e-1 At1g48770 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-6 56 Arabidopsis thaliana At4g36860 829839 zinc ion binding F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB - - - C.G. S.X.
0.23 8e-27 123 Glycine max Gma.2633.2.S1_at BE329874 - - 5e-45 At4g36860 zinc ion binding C.G. S.X.
0.49 0 977 Hordeum vulgare Contig20846_at Contig20846 - - 3e-6 At4g36860 zinc ion binding C.G. S.X.
0.25 2e-24 115 Populus trichocarpa PtpAffx.17938.1.S1_at CV267257 hypothetical protein - 9e-50 At4g36860 zinc ion binding C.G. S.X.
0.11 2e-20 101 Triticum aestivum TaAffx.128547.1.S1_at BJ232676 - - 1e-8 At1g19270 DA1 (DA 1) C.G. S.X.
0.12 2e-14 79 Vitis vinifera 1609571_at BQ795107 hypothetical protein LOC100258119 - 6e-12 At4g36860 zinc ion binding C.G. S.X.
0.20 9e-15 81 Zea mays Zm.14545.1.A1_at CD448362 zinc ion binding protein - 5e-17 At4g36860 zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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