CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0169900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os06g0169900 CB096301 - Hypothetical protein 5e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) S.X. H.G.
0.67 87.2 Os12g0455000 AK111239.1 - Conserved hypothetical protein 1e+0 At4g09450 myb family transcription factor S.X. H.G.
0.63 82.7 Os02g0791400 AK062787.1 - Cytochrome oxidase c, subunit VIb family protein 6e+0 At2g47910 CRR6 (chlororespiratory reduction 6) S.X. H.G.
0.56 76.3 Os11g0428800 CF291095 - Plastocyanin-like domain containing protein 1e+1 At5g35470 unknown protein S.X. H.G.
0.53 71.3 Os07g0174900 9635.m00735 - Plant lipid transfer protein/Par allergen familyprotein 5e+0 At5g26890 unknown protein S.X. H.G.
0.36 44.0 Os01g0347600 NM_183998.1 - Ervatamin B (EC 3.4.22.-) (ERV-B) 4e-2 At1g29090 peptidase C1A papain family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.1 99.5 GSM359913 IR63731 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
22.9 99.3 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
22.0 99.3 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.8 99.2 GSM359914 IR63731 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.8 99.2 GSM359905 FL478 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
20.7 99.2 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
20.5 99.1 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
19.9 99.1 GSM359917 IR63731 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
19.2 99.0 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.5 99.0 GSM359916 IR63731 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 42 Os01g0348900 AF435970.1 - Jacalin-related lectin domain containing protein 2e+0 At1g01080 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative C.G. S.X.
0.03 1e-2 42 Os12g0228700 BX900947 - Beta-glucosidase aggregating factor 7e-2 At5g07380 unknown protein C.G. S.X.
0.02 4e-3 44 Os11g0607900 9639.m03597 - Protein kinase domain containing protein 7e-2 At3g59480 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.01 6e-5 50 Os11g0524400 9639.m02922 - - 1e-1 At1g26260 CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) C.G. S.X.
0.01 1e-2 42 Os02g0301800 AK067818.1 - Disease resistance protein family protein 5e-1 At5g20310 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At5g14320 831282 30S ribosomal protein S13, chloroplast (CS13) F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA - - - C.G. S.X.
0.03 3e+0 34 Glycine max GmaAffx.15613.1.S1_at AI939073 - - 3e-1 At3g56770 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 6e-2 38 Hordeum vulgare Contig6157_at Contig6157 - - 2e+0 At5g54420 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.76403.1.A1_at CV232143 hypothetical protein - 3e+0 At4g19035 LCR7 (Low-molecular-weight cysteine-rich 7) C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.129484.2.A1_x_at CA674583 - - 1e+1 At5g26912 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1622623_at CF514619 hypothetical protein LOC100258799 - 1e+0 At1g64680 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.13270.1.A1_at AY107233.1 - - 4e-13 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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