CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0164400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os06g0164400 D43106 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 6e+0 At4g12860 UNE14 (unfertilized embryo sac 14) S.X. H.G.
0.33 38.8 Os03g0307000 9631.m01916 - Hypothetical protein 1e-7 At1g56423 unknown protein S.X. H.G.
0.31 34.5 Os11g0163800 AK105532.1 - Protein of unknown function DUF793 family protein 9e-1 At4g08380 proline-rich extensin-like family protein S.X. H.G.
0.30 32.7 Os03g0801900 AK106415.1 - Protein of unknown function DUF569 family protein 7e-1 At1g55140 RNA binding / ribonuclease III S.X. H.G.
0.27 27.5 Os12g0224000 AK060284.1 - Diacylglycerol kinase 2 (At5g63770) (EC 2.7.1.107) 4e-12 At5g63770 ATDGK2 (Diacylglycerol kinase 2) S.X. H.G.
0.27 27.5 Os02g0780700 AK063558.1 - Lipase, class 3 family protein 4e-10 At3g14075 lipase class 3 family protein S.X. H.G.
0.25 24.1 Os07g0680900 AK066191.1 - Serine/threonine-protein kinase AtPK19 (EC2.7.1.37) (Ribosomal- protein S6 kinase homolog) 2e-33 At3g08720 S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) S.X. H.G.
0.25 24.1 Os06g0717100 AK071437.1 - Senescence-associated family protein 9e-4 At3g51250 senescence/dehydration-associated protein-related S.X. H.G.
0.23 21.2 Os01g0739200 AK073172.1 - Dual specificity protein phosphatase familyprotein 3e-3 At3g16350 myb family transcription factor S.X. H.G.
0.15 10.3 Os05g0414100 9633.m03166 - Transcription factors TFIIS, elongin A, CRSP70,conserved domain containing protein 2e-2 At5g11930 glutaredoxin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 98.8 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
15.0 98.6 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.6 98.4 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
10.7 98.1 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.8 98.0 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.1 97.7 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.3 97.5 GSM159205 Inflorescence (P6, 22 - 30 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
7.1 97.4 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.9 97.3 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-9 63 Os12g0610200 AK066763.1 - Phytochrome-interacting factor 3(Phytochrome-associated protein 3) (Basichelix-loop-helix protein 8) (bHLH8) (AtbHLH008) 5e-12 At2g43010 PIF4 (phytochrome interacting factor 4) C.G. S.X.
0.06 6e-8 59 Os03g0639300 AK060505.1 - BP-5 protein 3e-1 At4g28811 transcription regulator C.G. S.X.
0.05 6e-8 59 Os10g0556200 CB624216 - SPATULA 8e-3 At4g00050 UNE10 (unfertilized embryo sac 10) C.G. S.X.
0.05 1e-3 46 Os02g0795800 9630.m05489 - - 3e-21 At2g24260 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 2e-4 48 Os07g0143200 AK060245.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) C.G. S.X.
0.03 2e-1 38 Os03g0732000 BM419374 - LYTB-like protein precursor 1e+0 At1g34350 unknown protein C.G. S.X.
0.02 2e-1 38 Os12g0171700 AK101827.1 - Hypothetical protein 6e-2 At5g13460 IQD11 (IQ-domain 11) C.G. S.X.
0.02 3e+0 34 Os03g0367300 9631.m02466 - - 3e+0 At1g26450 beta-1,3-glucanase-related C.G. S.X.
0.02 1e+1 32 Os10g0477400 NM_197009.1 - - 2e-1 At3g01650 RGLG1 (RING domain Ligase1) C.G. S.X.
0.01 1e+1 32 Os07g0134600 9635.m00351 - Protein kinase domain containing protein 1e-3 At2g16250 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At4g12860 826898 UNE14 (unfertilized embryo sac 14) F:calcium ion binding;P:double fertilization forming a zygote and endosperm;C:cellular_component unknown;MOPFB - - - C.G. S.X.
0.03 8e+0 32 Glycine max HgAffx.19372.1.S1_at CA939809 - - 2e-1 At2g33655 F-box family protein C.G. S.X.
0.13 5e-8 57 Hordeum vulgare Contig15975_at Contig15975 - - 4e-8 At5g67110 ALC (ALCATRAZ) C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.45729.1.A1_a_at CV232935 - - 2e-2 At2g36540 NLI interacting factor (NIF) family protein C.G. S.X.
0.05 2e+0 34 Triticum aestivum TaAffx.106039.1.S1_at CA725507 - - 8e-1 At3g54210 ribosomal protein L17 family protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1612065_at CB976356 - - 1e+0 At1g53815 F-box family protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1042.1.A1_at AI881783 - - 3e+0 At2g34700 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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