Gene omics information

Query gene ID Os06g0133900
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8094.6Os06g0133900AB016765.1-5-enolpyruvylshikimate-3-phosphate synthase (EC2.5.1.19) (Fragment)2e-35At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseS.X.H.G.
0.5068.0Os07g0622200AK069968.1-Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1)2e-8At4g33510DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)S.X.H.G.
0.3134.5Os08g0498100AB110168.1-Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)(Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2)(CCoAOMT-2)2e+0At3g54000-S.X.H.G.
0.2219.4Os08g0459600AK071203.1-12-oxophytodienoate reductase 3 (EC 1.3.1.42)2e-7At2g06050OPR3 (OPDA-REDUCTASE 3)S.X.H.G.
0.1510.3Os11g0604600AK102376.1-Conserved hypothetical protein1e-27At2g22120protein binding / zinc ion bindingS.X.H.G.
0.052.5Os05g0135700BM422069-S-adenosylmethionine synthetase 1 (EC 2.5.1.6)(Methionine adenosyltransferase 1) (AdoMet synthetase 1)1e-8At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.297.1GSM159208Seed (S1, 0 - 2 dap), biological rep 2GSE6893Expression data for reproductive development in rice
4.696.3GSM159207Seed (S1, 0 - 2 dap), biological rep 1GSE6893Expression data for reproductive development in rice
4.496.2GSM159204Inflorescence (P6, 22 - 30 cm), biological rep 1GSE6893Expression data for reproductive development in rice
4.296.0GSM159206Inflorescence (P6, 22 - 30 cm), biological rep 3GSE6893Expression data for reproductive development in rice
4.095.9GSM159205Inflorescence (P6, 22 - 30 cm), biological rep 2GSE6893Expression data for reproductive development in rice
4.095.9GSM262020Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.895.7GSM278855KT95-418-non-infected, biological rep3GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.595.3GSM262000IAC165, 2 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.495.2GSM262021Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.495.2GSM359912IR29 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.115e-149529Os06g0134000D12632.1-Ribosomal protein S10 family protein4e-16At3g4503040S ribosomal protein S20 (RPS20A)C.G.S.X.
0.032e-656Os03g0722000AK069866.1-Conserved hypothetical protein3e+0At5g21050-C.G.S.X.
0.038e-344Os05g0386000AK121888.1-Conserved hypothetical protein1e-13At5g25265unknown proteinC.G.S.X.
0.023e-552Os10g0470700AK101055.1-Peptide transporter1e-9At5g46050PTR3 (PEPTIDE TRANSPORTER 3)C.G.S.X.
0.022e-346Os01g0191900AK109125.1-Blind4e-2At3g27809unknown proteinC.G.S.X.
0.023e-138Os01g0645200BI812412-Bile acid:sodium symporter family protein1e+0At2g34560katanin, putativeC.G.S.X.
0.023e-138Os07g0631100AK120972.1-Putative zinc-binding region DUF701 domaincontaining protein2e-6At5g46030unknown proteinC.G.S.X.
0.011e+036Os04g0166000AK101349.1-Conserved hypothetical protein5e-1At2g32380-C.G.S.X.
0.011e+036Os10g0131400NM_194727.1--5e-1At3g58530F-box family protein-relatedC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.382e-35151Arabidopsis thalianaAt2g453008191383-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseencodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis---C.G.S.X.
0.432e-27125Glycine maxGma.10326.1.S1_s_atCD414575--6e-60At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseC.G.S.X.
0.094e-29129Hordeum vulgarebasd0c03_s_atbasd0c03--3e+0At3g16770ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)C.G.S.X.
0.213e-29131Populus trichocarpaPtp.2568.1.S1_s_atCV2463193-phosphoshikimate 1-carboxyvinyltransferase-7e-53At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeC.G.S.X.
0.5301344Triticum aestivumTa.26746.1.A1_atCD491034--9e-36At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseC.G.S.X.
0.214e-31135Vitis vinifera1621725_atCF568814--9e-66At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeC.G.S.X.
0.6301346Zea maysZm.98.1.S1_atAY106729.13-phosphoshikimate 1-carboxyvinyltransferase-2e-48At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0009073The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
SGO:0009423The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
SGO:0033587The chemical reactions and pathways resulting in the formation of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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