CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0123000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os06g0123000 AK108643.1 - Hypothetical protein 8e+0 At2g47420 dimethyladenosine transferase, putative S.X. H.G.
0.61 81.2 Os12g0274200 AK063071.1 - Lipolytic enzyme, G-D-S-L family protein 8e-6 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.53 71.3 Os07g0206900 AK107761.1 - Conserved hypothetical protein 1e+0 At4g18900 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.53 71.3 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 S.X. H.G.
0.33 38.8 Os08g0433400 AK059468.1 - Myb, DNA-binding domain containing protein 2e-20 At3g01140 MYB106 (myb domain protein 106) S.X. H.G.
0.23 21.2 Os08g0550500 AK058423.1 - Conserved hypothetical protein 4e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.8 99.0 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
17.7 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
13.9 98.5 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
11.1 98.2 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
10.1 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Os01g0184600 NM_189603.1 - - 3e+0 At1g22520 unknown protein C.G. S.X.
0.02 4e+0 34 Os08g0142100 9636.m00393 - - 1e+0 At1g78172 unknown protein C.G. S.X.
0.01 1e+0 36 Os01g0127000 AK105526.1 - Multicopper oxidase, type 1 domain containingprotein 4e+0 At5g02270 ATNAP9 C.G. S.X.
0.01 1e+0 36 Os01g0127100 AK106749.1 - Conserved hypothetical protein 3e+0 At5g15254 unknown protein C.G. S.X.
0.01 1e+0 36 Os05g0149200 9633.m00483 - PWWP domain containing protein 4e-1 At1g16510 auxin-responsive family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At2g47420 819355 dimethyladenosine transferase, putative F:rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity;P:rRNA modification, rRNA processing;C:cellular_component unknown;BOMAFP - - - C.G. S.X.
0.03 3e+0 34 Glycine max PsAffx.CL841Contig1_s_at PsAffx.CL841Contig1 - - 2e-1 At1g24010 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare EBem06_SQ003_J09_at EBem06_SQ003_J09 - - 3e+0 At2g36916 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.43118.3.A1_at CV253351 nbs-lrr resistance protein /// nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// hypothetical protein - 2e-2 At1g17020 SRG1 (SENESCENCE-RELATED GENE 1) C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.78736.1.S1_at CA727995 - - 3e-1 At2g47485 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1616774_at CF568877 - - 4e+0 At5g42957 unknown protein C.G. S.X.
0.02 9e-1 34 Zea mays Zm.2058.1.A1_at BG268299 - - 1e+1 At4g32470 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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