Gene omics information

Query gene ID	Os06g0120200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os06g0120200	AK066196.1	-	Protein of unknown function DUF594 family protein	3e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os07g0619400	AK062716.1	-	Calcium-binding EF-hand domain containing protein	9e-2	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os04g0295500	AK065384.1	-	Conserved hypothetical protein	4e-1	At1g65040	protein binding / zinc ion binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os08g0113500	AK071052.1	-	No apical meristem (NAM) protein family protein	1e-3	At2g02450	ANAC035 (Arabidopsis NAC domain containing protein 35)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os05g0129800	9633.m00316	-	DNA-binding WRKY domain containing protein	5e-10	At4g24240	WRKY7	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os02g0318500	9630.m02046	-	PDR-like ABC transporter (PDR2 ABC transporter)	1e-10	At2g36380	PDR6	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.0	98.5	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.9	98.3	GSM159180	Mature leaf, biological rep 1	GSE6893	Expression data for reproductive development in rice
11.4	98.2	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4	98.1	GSM421685	XOC, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM421704	XOO, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.2	97.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.7	97.3	GSM421705	XOO, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.6	97.3	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.4	97.2	GSM421725	MOCK, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-34	149	Os06g0119300	AK067271.1	-	Protein of unknown function DUF594 family protein	9e-2	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	7e-47	190	Os06g0122200	AK109712.1	-	Protein of unknown function DUF594 family protein	9e-2	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	5e-17	91	Os06g0119100	AK065857.1	-	Protein of unknown function DUF594 family protein	3e-1	At4g12050	DNA-binding protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-6	56	Os07g0222200	AK107502.1	-	Protein of unknown function DUF594 family protein	4e-4	At2g39830	DAR2 (DA1-RELATED PROTEIN 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-10	67	Os01g0333600	NM_183888.1	-	-	1e+0	At1g23980	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Arabidopsis thaliana	At1g74560	843797	NRP1 (NAP1-RELATED PROTEIN 1)	Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-1	40	Glycine max	PsAffx.CL1401Contig1_at	PsAffx.CL1401Contig1	-	-	2e-5	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	C.G.	S.X.	Please select
0.02	4e-2	40	Hordeum vulgare	Contig7435_at	Contig7435	-	-	3e-2	At5g06340	ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27)	C.G.	S.X.	Please select
0.01	5e-1	38	Populus trichocarpa	PtpAffx.203.3.A1_at	CV269424	hypothetical protein	-	3e-1	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	40	Triticum aestivum	TaAffx.65157.1.S1_at	BJ258800	-	-	9e-1	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	C.G.	S.X.	Please select
0.01	1e-1	38	Vitis vinifera	1610009_at	CF205831.1	-	-	2e-11	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	C.G.	S.X.	Please select
0.02	2e-3	44	Zea mays	Zm.11891.1.A1_at	BM381583	helix-loop-helix DNA-binding domain containing protein	-	6e-2	At5g42420	transporter-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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