CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0117250

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.4 Os06g0117250 9634.m00190 - - 1e+0 At1g03140 splicing factor Prp18 family protein S.X. H.G.
0.19 15.1 Os01g0208800 AK109734.1 - Conserved hypothetical protein 4e-12 At2g42600 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) S.X. H.G.
0.17 12.6 Os04g0651200 9632.m05427 - - 5e-1 At5g08190 NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12) S.X. H.G.
0.11 6.5 Os01g0277100 AK062999.1 - Hypothetical protein 2e+0 At4g14010 RALFL32 (ralf-like 32) S.X. H.G.
0.11 6.5 Os01g0845400 9629.m06194 - - 2e+0 At2g17442 unknown protein S.X. H.G.
0.07 3.7 Os01g0190900 NM_185202.1 - Mutator-like transposase 3e-2 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) S.X. H.G.
0.07 3.7 Os03g0107200 NM_187646.1 - - 5e-2 At5g46040 proton-dependent oligopeptide transport (POT) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.6 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
40.1 99.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.4 99.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.9 99.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.3 99.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.9 99.6 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.4 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Os07g0148500 9635.m00481 - - 4e+0 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) C.G. S.X.
0.03 1e-5 52 Os11g0156300 AK107140.1 - Uncharacterized plant-specific domain containingprotein 1e-2 At5g57070 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 4e-5 50 Os07g0516000 AK106685.1 - Sialidase domain containing protein 1e-3 At5g57700 BNR/Asp-box repeat family protein C.G. S.X.
0.02 6e-4 46 Os02g0437200 AK065640.1 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) C.G. S.X.
0.01 6e-4 46 Os03g0773700 AK102670.1 - Receptor-like protein kinase 2 8e-9 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.01 6e-4 46 Os09g0517200 9637.m02946 - Disease resistance protein family protein 4e-1 At5g23100 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g03140 839567 splicing factor Prp18 family protein F:unknown;P:RNA splicing;C:spliceosome;MOFPB - - - C.G. S.X.
0.05 3e-5 50 Glycine max PsAffx.C87000026_at PsAffx.C87000026 - - 9e-2 At1g68945 unknown protein C.G. S.X.
0.04 2e-3 42 Hordeum vulgare Contig5099_at Contig5099 - - 7e-13 At5g24420 glucosamine/galactosamine-6-phosphate isomerase-related C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.99938.1.A1_s_at BP937099 hypothetical protein - 2e+0 At4g21810 DER2.1 (DERLIN-2.1) C.G. S.X.
0.04 5e-3 42 Triticum aestivum Ta.24641.2.S1_at CA620303 Ribosomal protein L39 - 9e-16 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1616828_s_at CD799685 similar to Os03g0670700 - 1e+0 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.04 8e-3 40 Zea mays Zm.17652.1.S1_s_at CK347269 plant-specific domain TIGR01615 family protein - 3e+0 At5g59570 myb family transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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