CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0103900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os06g0103900 AK111870.1 - Putative methyltransferase DUF248 family protein 3e-10 At4g10440 dehydration-responsive family protein S.X. H.G.
0.50 68.0 Os04g0628400 AK066646.1 - BED finger domain containing protein 4e-1 At5g25310 catalytic S.X. H.G.
0.44 58.1 Os10g0181700 AK058820.1 - ATP-binding region, ATPase-like domain containingprotein 2e+0 At5g46980 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.42 53.9 Os10g0546200 CA759033 - Conserved hypothetical protein 2e-3 At5g04480 - S.X. H.G.
0.40 51.1 Os02g0523300 AK121782.1 - Spc97/Spc98 family protein 1e-4 At1g80260 emb1427 (embryo defective 1427) S.X. H.G.
0.35 41.7 Os03g0423800 AK069431.1 - Conserved hypothetical protein 3e-1 At2g03070 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.5 97.2 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.4 97.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.2 96.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.8 96.5 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
4.7 96.4 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 0 2819 Os06g0104000 AK068490.1 - Conserved hypothetical protein 5e-3 At2g46915 unknown protein C.G. S.X.
0.08 3e-86 321 Os06g0103800 AK067892.1 - Protein of unknown function DUF125 family protein 1e-3 At5g65200 PUB38 (PLANT U-BOX 38) C.G. S.X.
0.07 4e-14 81 Os10g0510400 AK100601.1 - Putative methyltransferase DUF248 family protein 1e-3 At1g33170 dehydration-responsive family protein C.G. S.X.
0.04 5e-17 91 Os05g0593800 AK111911.1 - Casein kinase I (Fragment) 4e-59 At4g26100 CK1 (CASEIN KINASE 1) C.G. S.X.
0.03 4e-8 61 Os05g0106600 AK103340.1 - Non-muscle actin 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.03 2e-7 59 Os02g0193500 AK101237.1 - Hypothetical protein 3e+0 At1g58242 unknown protein C.G. S.X.
0.02 2e-7 59 Os10g0565600 AK103864.1 - Lipoprotein, type 6 family protein 4e-4 At1g55255 - C.G. S.X.
0.02 6e-7 57 Os12g0244200 AK120721.1 - Conserved hypothetical protein 2e+0 At2g14700 unknown protein C.G. S.X.
0.02 5e-6 56 Os10g0569300 AK072459.1 - Putative methyltransferase DUF248 family protein 3e-10 At1g26850 dehydration-responsive family protein C.G. S.X.
0.01 7e-5 52 Os03g0253500 AK065442.1 - D111/G-patch domain containing protein 4e-2 At3g18360 VQ motif-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-10 67 Arabidopsis thaliana At4g10440 826636 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOA - - - C.G. S.X.
0.05 3e-2 42 Glycine max GmaAffx.92786.1.S1_at CF807256 - - 2e-18 At4g18030 dehydration-responsive family protein C.G. S.X.
0.09 2e-4 48 Hordeum vulgare Contig8454_at Contig8454 - - 2e-14 At1g33170 dehydration-responsive family protein C.G. S.X.
0.25 2e-34 149 Populus trichocarpa PtpAffx.201426.1.S1_at pmrna2818 hypothetical protein - 3e-53 At4g10440 dehydration-responsive family protein C.G. S.X.
0.34 9e-165 581 Triticum aestivum Ta.4185.2.S1_at BJ260400 - - 3e-4 At4g10440 dehydration-responsive family protein C.G. S.X.
0.08 6e-3 42 Vitis vinifera 1612756_at CF207475 hypothetical protein LOC100258541 - 1e-45 At1g26850 dehydration-responsive family protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.1344.1.A1_at CA402844 - - 9e-7 At4g00750 dehydration-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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