CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0594900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os05g0594900 AK121070.1 - U6 snRNA-associated Sm-like protein LSm8 1e+0 At1g65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
0.67 87.2 Os08g0412200 AK059631.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At3g46580 MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5) S.X. H.G.
0.60 79.7 Os03g0352400 AK105418.1 - Autoantigen NGP-1 3e-50 At1g52980 GTP-binding family protein S.X. H.G.
0.60 79.7 Os02g0610600 AK099572.1 - 9G8-like SR protein (RSZp22 splicing factor) 9e-9 At2g24590 splicing factor, putative S.X. H.G.
0.59 78.0 Os04g0611300 AK063022.1 - Conserved hypothetical protein 2e+0 At3g47180 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.46 60.9 Os01g0514000 AK063801.1 - 50S ribosomal protein L24e 1e-10 At2g44860 60S ribosomal protein L24, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 97.3 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.7 97.3 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.3 97.2 GSM159193 Inflorescence (P2, 3 - 5 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
5.8 97.0 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.9 96.5 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.8 96.5 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
4.7 96.4 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
4.7 96.4 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
4.5 96.3 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-26 121 Os05g0595000 AK071326.1 - Allergen V5/Tpx-1 related family protein 1e+0 At3g60420 - C.G. S.X.
0.03 1e-2 42 Os02g0141000 AK121058.1 - - 6e-3 At3g28940 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative C.G. S.X.
0.02 1e-2 42 Os10g0467600 U34598.1 - Eukaryotic translation initiation factor 4E-2(eIF4E-2) (eIF-4E-2) (mRNA cap-binding protein)(eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) 1e-11 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) C.G. S.X.
0.02 1e-2 42 Os12g0165700 CB663072 - Transcription factors TFIIS, elongin A, CRSP70,conserved domain containing protein 2e-1 At5g09850 transcription elongation factor-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 1e+0 34 Arabidopsis thaliana At1g65700 842881 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative F:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOP - - - C.G. S.X.
0.14 9e-9 61 Glycine max Gma.16289.1.S1_at AW598415 - - 2e-11 At1g65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.24 2e-44 178 Hordeum vulgare Contig14126_at Contig14126 - - 2e-6 At1g65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.249.887.S1_at CX175057 hypothetical protein - 1e+0 At5g40550 unknown protein C.G. S.X.
0.35 4e-44 178 Triticum aestivum Ta.14555.1.S1_at BJ290586 - - 3e-4 At1g65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612523_at CF516655 - - 2e-5 At5g06580 FAD linked oxidase family protein C.G. S.X.
0.28 9e-65 246 Zea mays Zm.9204.1.S1_at CF625658 LSM Sm-like protein family member - 8e+0 At5g57625 allergen V5/Tpx-1-related family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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