CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0584400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 62.3 Os05g0584400 AK106631.1 - Conserved hypothetical protein 2e+0 At5g55570 unknown protein S.X. H.G.
0.50 68.0 Os03g0727800 AK109453.1 - Cyclin-like F-box domain containing protein 3e+0 At3g52540 OFP18 (OVATE FAMILY PROTEIN 18) S.X. H.G.
0.30 32.7 Os07g0406800 AK101812.1 - Eukaryotic-type DNA primase, large subunit familyprotein 2e-5 At1g67320 DNA primase, large subunit family S.X. H.G.
0.27 27.5 Os01g0302500 AB028883.1 - Knotted1-type homeobox protein OSH6 4e-2 At1g70510 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) S.X. H.G.
0.26 25.6 Os02g0762200 AK103885.1 - Zn-finger, CCHC type domain containing protein 2e-1 At3g02910 - S.X. H.G.
0.18 13.7 Os03g0591300 AK101749.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 9e-1 At4g30662 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.5 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.2 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Os04g0556800 9632.m04533 - - 1e-2 At3g24100 - C.G. S.X.
0.02 3e-3 44 Os07g0615200 AK065604.1 - ZIM domain containing protein 7e-1 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) C.G. S.X.
0.02 1e-2 42 Os03g0194500 9631.m00889 - Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein 1e-1 At4g26670 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein C.G. S.X.
0.02 1e-2 42 Os04g0475200 9632.m03792 - - 1e-1 At3g44950 glycine-rich protein C.G. S.X.
0.02 2e-2 42 Os03g0663800 AK105347.1 - - 8e-3 At1g58420 - C.G. S.X.
0.02 2e-2 42 Os06g0638100 AK073270.1 - Conserved hypothetical protein 2e+0 At3g50860 clathrin adaptor complex small chain family protein C.G. S.X.
0.02 2e-2 42 Os11g0266000 AK073284.1 - Hypothetical protein 2e-1 At3g42310 unknown protein C.G. S.X.
0.01 6e-5 50 Os11g0232100 AK105669.1 - Protein kinase domain containing protein 7e-3 At1g72180 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.82722.1.S1_at BM085018 - - 5e-2 At5g60680 unknown protein C.G. S.X.
0.03 2e-2 40 Hordeum vulgare HB08N07r_at HB08N07r - - 2e-1 At3g04590 DNA-binding family protein C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.157702.1.S1_s_at CF936051 hypothetical protein - 7e+0 At5g40430 MYB22 (myb domain protein 22) C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.80154.2.S1_at CA733310 - - 4e+0 At3g57690 AGP23 (ARABINOGALACTAN-PROTEIN 23) C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1609452_at BQ794280 hypothetical protein LOC100249768 - 3e-1 At4g31460 ribosomal protein L28 family protein C.G. S.X.
0.03 6e-2 38 Zea mays Zm.11725.1.A1_at BM380225 - - 3e+0 At4g05430 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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