CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0573300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os05g0573300 AK070411.1 - CTP synthase family protein 1e-37 At3g12670 emb2742 (embryo defective 2742) S.X. H.G.
0.67 87.2 Os01g0860800 AK070331.1 - Glycoside hydrolase, family 17 protein 3e-2 At5g42100 ATBG_PAP S.X. H.G.
0.55 73.7 Os04g0671200 AK106044.1 - Flavin-containing amine oxidase family protein 1e+0 At2g43020 ATPAO2 (Polyamine oxidase 2) S.X. H.G.
0.50 68.0 Os07g0622000 AB125303.1 - Abscisic acid-inducible protein kinase (EC2.7.1.-) (Fragment) 1e-39 At4g33950 OST1 (OPEN STOMATA 1) S.X. H.G.
0.46 60.9 Os10g0574700 CB630449 - Protein of unknown function DUF597 family protein 4e-2 At4g17900 zinc-binding family protein S.X. H.G.
0.42 53.9 Os01g0900800 AK068254.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-18 At2g43140 DNA binding / transcription factor S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 98.8 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
13.8 98.5 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
13.5 98.5 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
13.2 98.4 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
13.0 98.4 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
12.6 98.4 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.3 98.3 GSM278854 KT95-418-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.0 98.3 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.2 98.0 GSM278851 KT95-418-RSV infected,biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.1 97.9 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 0 906 Os01g0654100 AK069482.1 - CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase)(CTP synthetase) 4e-56 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.14 1e-29 133 Os12g0556600 AK063965.1 - CTP synthase family protein 4e-25 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
0.12 7e-44 180 Os05g0569700 9633.m04638 - UTP-ammonia ligase (Fragment) 4e-18 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-37 159 Arabidopsis thaliana At3g12670 820447 emb2742 (embryo defective 2742) F:CTP synthase activity, catalytic activity;P:embryonic development ending in seed dormancy, response to cadmium ion;C:endomembrane system;OBMFAP - - - C.G. S.X.
0.09 5e-16 87 Glycine max GmaAffx.87872.1.S1_at BM885036 - - 5e-38 At1g30820 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
0.58 0 1487 Hordeum vulgare Contig5196_at Contig5196 - - 2e-24 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
0.42 5e-50 200 Populus trichocarpa PtpAffx.209216.1.S1_s_at pmrna18225 hypothetical protein - 8e-106 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.32 2e-101 371 Triticum aestivum Ta.6898.1.S1_at CA665240 - - 1e-56 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1607564_at CB350061 UPF0497 membrane protein 4 - 1e+1 At5g41530 - C.G. S.X.
0.39 2e-154 545 Zea mays Zm.5755.1.A1_at AI834089 - - 2e-4 At1g30820 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage