CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0563600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os05g0563600 AK099313.1 - Beta-Ig-H3/fasciclin domain containing protein 6e-1 At5g09310 unknown protein S.X. H.G.
0.83 95.8 Os04g0650300 AK062726.1 - - 5e+0 At1g63410 unknown protein S.X. H.G.
0.77 93.1 Os05g0386800 AK070472.1 - - 2e-17 At5g60920 COB (COBRA) S.X. H.G.
0.73 91.1 Os07g0462200 AK059964.1 - Protein of unknown function DUF1218 family protein 3e-2 At1g13380 unknown protein S.X. H.G.
0.67 87.2 Os05g0176100 AK067850.1 - Cellulose synthase-1 3e-82 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.63 82.7 Os09g0494200 AK069564.1 - Glycoside hydrolase, family 19 protein 4e-6 At3g16920 chitinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 96.5 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
3.7 95.6 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
3.6 95.5 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.6 95.5 GSM100440 Rice Azucena 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.5 95.3 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5 95.3 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.5 95.3 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
3.4 95.2 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM99866 TCHW P9_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-11 69 Os01g0668100 AK105603.1 - Beta-Ig-H3/fasciclin domain containing protein 1e-1 At3g57500 unknown protein C.G. S.X.
0.09 5e-9 63 Os02g0308400 AK104655.1 - Beta-Ig-H3/fasciclin domain containing protein 5e-1 At4g19200 proline-rich family protein C.G. S.X.
0.09 5e-6 54 Os01g0159200 AK108308.1 - Arabinogalactan protein 2e+0 At5g66490 unknown protein C.G. S.X.
0.03 3e-7 57 Os02g0196100 AK108729.1 - The start codon is not identified. 1e-7 At3g20880 zinc finger (C2H2 type) protein (WIP4) C.G. S.X.
0.02 3e-4 48 Os03g0651300 AK068866.1 - Protein of unknown function DUF580 family protein 2e-1 At4g29430 rps15ae (ribosomal protein S15A E) C.G. S.X.
0.02 3e-4 48 Os03g0840200 AK067797.1 - TolB, C-terminal domain containing protein 1e-3 At1g21680 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At5g09310 830790 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.03 2e-4 48 Glycine max PsAffx.C112000018_at PsAffx.C112000018 - - 2e+0 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.45 4e-62 238 Hordeum vulgare Contig6782_at Contig6782 - - 6e-1 At5g41660 unknown protein C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.28796.2.S1_at CV273876 - - 5e-3 At5g05360 unknown protein C.G. S.X.
0.17 3e-15 83 Triticum aestivum TaAffx.23971.1.S1_at CA727436 - - 1e+1 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1609442_at CF373210 hypothetical protein LOC100243127 - 3e-4 At3g05800 transcription factor C.G. S.X.
0.31 3e-90 331 Zea mays Zm.4914.1.S1_at CD437635 - - 8e-4 At5g49330 AtMYB111 (myb domain protein 111) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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