Gene omics information

Query gene ID Os05g0558400
Gene name
Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8094.6Os05g0558400AK072756.1-Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC (Atbcat-3)5e-24At5g65780ATBCAT-5S.X.H.G.
0.3134.5Os04g0564600AK120614.1-HMG1 protein4e-1At4g33310unknown proteinS.X.H.G.
0.2931.1Os08g0547000CR279882-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e+0At1g16810unknown proteinS.X.H.G.
0.2524.1Os07g0587400AK103740.1-Eukaryotic peptide chain release factor subunit1-3 (eRF1-3) (Eukaryotic release factor 1-3) (Omnipotentsuppressor protein 1 homolog 3) (SUP1 homolog 3)4e-145At1g12920ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)S.X.H.G.
0.149.3Os05g0564200AK070198.1-U2 snRNP auxiliary factor, small subunit2e-22At1g27650ATU2AF35AS.X.H.G.
0.105.7Os02g0199900AB033536.1-26S proteasome regulatory complex subunit p42D2e-91At5g43010RPT4AS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.796.4GSM67058IR29 control replicate 1GSE3053Rice salt expression
4.596.3GSM154955Leaf_tZ-treatment_120min_replicate 2GSE6719Cytokinin responsive genes in rice
4.496.2GSM67055FL478 salt stressed replicate 1GSE3053Rice salt expression
4.396.1GSM154950Leaf_tZ-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in rice
4.296.0GSM67056FL478 salt stressed replicate 2GSE3053Rice salt expression
4.296.0GSM67054FL478 control replicate 3GSE3053Rice salt expression
3.995.8GSM154954Leaf_tZ-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in rice
3.995.8GSM154949Leaf_tZ-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in rice
3.895.7GSM67062IR29 salt stressed replicate 3GSE3053Rice salt expression
3.895.7GSM67059IR29 control replicate 2GSE3053Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.491e-114414Os03g0106400AK108687.1-Branched-chain-amino-acid aminotransferase 5,chloroplast precursor (EC (Atbcat-5)6e-14At5g65780ATBCAT-5C.G.S.X.
0.193e-116420Os05g0352800AK071056.1-Conserved hypothetical protein2e+0At5g25760PEX4 (PEROXIN4)C.G.S.X.
0.172e-80301Os02g0238500AK068881.1-Scramblase family protein1e-1At3g02220unknown proteinC.G.S.X.
0.163e-116420Os01g0857700AK066959.1-Cell cycle control protein cwf142e-19At4g21110G10 family proteinC.G.S.X.
0.142e-120434Os08g0137100AK111761.1-Polycomb group protein FIE2(FERTILIZATION-INDEPENDENT ENDOSPERM 2)1e-24At3g20740FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)C.G.S.X.
0.126e-155549Os07g0632600AK102629.1-Heat shock protein DnaJ, N-terminal domaincontaining protein1e+0At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)C.G.S.X.
0.022e-242Os07g0177300AK073781.1-Protein of unknown function UPF0005 family protein6e-4At4g15470-C.G.S.X.
0.029e-240Os03g03779009631.m02559--2e-2At5g46780VQ motif-containing proteinC.G.S.X.
0.029e-240Os03g0811700AK059288.1-Pre-mRNA branch site p14-like protein6e-31At5g12190RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.019e-240Os02g0119200AK070181.1-Adenosine monophosphate binding protein 1 AMPBP11e-3At1g66120acyl-activating enzyme 11 (AAE11)C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.225e-24113Arabidopsis thalianaAt5g65780836707ATBCAT-5encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant---C.G.S.X.
0.189e-33143Glycine maxGmaAffx.49521.2.S1_atBF066739--5e-34At5g65780ATBCAT-5C.G.S.X.
0.510886Hordeum vulgareContig8040_atContig8040--6e-11At3g49680BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)C.G.S.X.
0.281e-40169Populus trichocarpaPtpAffx.41318.1.S1_a_atCV265728hypothetical protein-3e-53At5g65780ATBCAT-5C.G.S.X.
0.313e-50200Triticum aestivumTaAffx.129191.1.S1_atCD906345--3e-5At1g10070ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)C.G.S.X.
0.161e-22107Vitis vinifera1622060_atBM436271--3e-32At5g65780ATBCAT-5C.G.S.X.
0.480847Zea maysZm.2520.1.A1_atAW400289hypothetical protein LOC100191754-5e-21At3g49680BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
LGO:0009081The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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