CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0557600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os05g0557600 AK121717.1 - Ubiquitin-conjugating enzymes domain containingprotein 3e-4 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) S.X. H.G.
0.60 79.7 Os09g0119100 AK102931.1 - Conserved hypothetical protein 1e-2 At2g28810 Dof-type zinc finger domain-containing protein S.X. H.G.
0.57 77.0 Os08g0484600 D82038.1 - OSK4 1e-52 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) S.X. H.G.
0.55 73.7 Os01g0932600 AK072340.1 - BTB/POZ domain containing protein 5e-22 At4g15840 protein binding S.X. H.G.
0.40 51.1 Os01g0672300 AK107129.1 - Hypothetical protein 2e-1 At1g72080 unknown protein S.X. H.G.
0.33 38.8 Os02g0274000 AK099750.1 - Conserved hypothetical protein 5e-3 At1g62240 unknown protein S.X. H.G.
0.27 27.5 Os04g0670800 AK073170.1 - The start codon is not identified. 2e-4 At1g14570 UBX domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.2 98.5 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.9 98.4 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.9 98.1 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
8.7 97.8 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
7.1 97.4 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
6.9 97.3 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.5 97.2 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
5.7 96.9 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
5.3 96.7 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 3e-30 135 Os01g0677500 9629.m04678 - - 3e+0 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) C.G. S.X.
0.33 5e-32 141 Os09g0294300 AK107258.1 - Ubiquitin-conjugating enzymes domain containingprotein 8e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.10 2e-9 65 Os01g0233900 AK100714.1 - Ubiquitin-conjugating enzymes domain containingprotein 5e-2 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) C.G. S.X.
0.06 5e-7 57 Os05g0232500 AK069430.1 - Ubiquitin-conjugating enzymes domain containingprotein 3e-4 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) C.G. S.X.
0.01 5e-4 48 Os01g0229900 AK065381.1 - Ubiquitin-conjugating enzymes domain containingprotein 1e-1 At4g18710 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) C.G. S.X.
0.01 5e-4 48 Os03g0679300 AK102311.1 - Conserved hypothetical protein 5e-1 At4g18710 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) C.G. S.X.
0.01 5e-4 48 Os09g0444200 AK099811.1 - Lecithin:cholesterol acyltransferase familyprotein 9e-30 At5g13640 ATPDAT C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Arabidopsis thaliana At3g15355 820772 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:cellular_component unknown;MFPOV - - - C.G. S.X.
0.05 1e-3 46 Glycine max Gma.3801.1.S1_at BI497593 - - 4e-15 At2g33770 PHO2 (PHOSPHATE 2) C.G. S.X.
0.09 1e-23 111 Hordeum vulgare Contig25679_at Contig25679 - - 2e-2 At1g58150 unknown protein C.G. S.X.
0.04 2e-2 42 Populus trichocarpa Ptp.8135.2.S1_at DN503783 - - 2e-7 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) C.G. S.X.
0.28 1e-83 311 Triticum aestivum Ta.9070.1.S1_at BJ258003 - - 1e-1 At2g03420 unknown protein C.G. S.X.
0.05 2e-5 50 Vitis vinifera 1622788_at CB920325 hypothetical protein LOC100262286 - 1e-1 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) C.G. S.X.
0.28 2e-83 309 Zea mays Zm.14760.1.S1_at AY104289.1 Ubiquitin-conjugating enzyme E2 - 2e+0 At2g13980 nucleic acid binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016579 The removal of one or more ubiquitin moieties from a protein.
L GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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