Gene omics information

Query gene ID Os05g0553800
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8295.0Os05g0553800AK103746.1-Anti-silencing protein-like (Anti-silencingfunction 1b) (Anti- silencing factor 1-like protein)7e-13At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)S.X.H.G.
0.3541.7Os11g0615100AK069228.1--9e-1At4g15975protein binding / zinc ion bindingS.X.H.G.
0.2219.4Os01g0267600CA762601-Galactose-binding like domain containing protein3e-1At3g10730sad1/unc-84-like 2 family proteinS.X.H.G.
0.2219.4Os03g0622600AK109300.1-Conserved hypothetical protein5e+0At4g04470PMP22S.X.H.G.
0.2016.5Os04g0348100AK061248.1-Conserved hypothetical protein2e-3At2g43110unknown proteinS.X.H.G.
0.1915.1Os06g0198600AK070593.1-Conserved hypothetical protein1e+0At3g24770CLE41 (CLAVATA3/ESR-RELATED 41)S.X.H.G.
0.1813.7Os07g0404300AK101785.1-Zn-finger, Ran-binding domain containing protein4e-25At1g55040zinc finger (Ran-binding) family proteinS.X.H.G.
0.1813.7Os02g0686600AK102917.1-Metal-dependent protein hydrolase family protein3e-15At5g41970-S.X.H.G.
0.1712.6Os03g0600400AK059328.1-Conserved hypothetical protein2e-5At1g13690ATE1S.X.H.G.
0.1611.3Os05g0351500AK108857.1-Hypothetical protein2e+0At5g47110lil3 protein, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.898.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in Musa
11.798.2GSM409421Nipponbare_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.198.2GSM409429Nipponbare_young panicle 2cm, biological rep5GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.098.2GSM409428Nipponbare_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.998.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in Musa
8.997.8GSM409422Nipponbare_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.397.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.297.7GSM409427Nipponbare_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.397.2GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigma
6.297.1GSM302917endo6D_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.331e-86321Os01g0685200NM_192084.1-Conserved hypothetical protein9e-21At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
0.023e-448Os11g0486000AK106715.1--1e+0At5g53590auxin-responsive family proteinC.G.S.X.
0.023e-138Os02g07199009630.m04763-Hypothetical protein5e+0At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.257e-1375Arabidopsis thalianaAt5g38110833791ASF1B (ANTI- SILENCING FUNCTION 1B)This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.---C.G.S.X.
0.352e-32141Glycine maxGmaAffx.64309.2.S1_atAW309050--4e-43At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
0.433e-155547Hordeum vulgareContig10104_atContig10104--1e-16At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
0.211e-21105Populus trichocarpaPtpAffx.43868.1.S1_atCV282588silencing group A protein-4e-45At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
0.413e-151535Triticum aestivumTa.6897.1.S1_atBJ310110--6e-19At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
0.023e+032Vitis vinifera1612443_atCF211151hypothetical protein LOC100258329-1e+0At3g45150TCP16 (TCP domain protein 16)C.G.S.X.
0.382e-162571Zea maysZm.13729.1.S1_atAY106251.1anti-silencing protein 1-1e-20At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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