CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0552600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.1 Os05g0552600 9633.m04465 - Extensin-like region family protein 5e-1 At5g48170 SLY2 (SLEEPY2) S.X. H.G.
0.67 87.2 Os11g0655500 9639.m04020 - - 6e-3 At5g03380 heavy-metal-associated domain-containing protein S.X. H.G.
0.32 36.3 Os01g0249700 9629.m01451 - - 9e-1 At4g18692 unknown protein S.X. H.G.
0.22 19.4 Os09g0468000 AK103478.1 - Multi antimicrobial extrusion protein MatE familyprotein 3e+0 At5g65380 ripening-responsive protein, putative S.X. H.G.
0.10 5.7 Os11g0141366 9639.m00367 - - 2e+0 At1g54240 DNA binding S.X. H.G.
0.07 3.7 Os02g0310800 9630.m01984 - - 9e-1 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) S.X. H.G.
0.04 2.0 Os10g0165000 AK122169.1 - Arabidopsis protein of unknown function DUF266family protein 4e+0 At5g66970 GTP binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
91.9 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.4 99.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 1e-24 115 Os01g0968200 NM_189425.1 - Root cap family protein 2e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.23 2e-29 131 Os01g0968300 AK122054.1 - Root cap family protein 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.20 7e-14 79 Os01g0968400 BE039193 - Root cap family protein 1e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.16 5e-24 113 Os04g0410400 AK108077.1 - Root cap family protein 1e+1 At5g13200 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.12 6e-36 153 Os11g0151200 AK106826.1 - Conserved hypothetical protein 2e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At5g48170 834869 SLY2 (SLEEPY2) encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. - - - C.G. S.X.
0.02 4e-2 40 Glycine max PsAffx.C61000051_at PsAffx.C61000051 - - 4e-51 At1g04820 TUA4 C.G. S.X.
0.16 7e-14 77 Hordeum vulgare Contig21025_at Contig21025 - - 7e-2 At2g16340 unknown protein C.G. S.X.
0.05 1e-2 42 Populus trichocarpa PtpAffx.204477.1.S1_at pmrna8789 hypothetical protein - 6e-6 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.14 6e-13 75 Triticum aestivum TaAffx.59075.1.S1_at CA643823 - - 2e-1 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1611444_at CF211599 - - 2e-1 At2g40310 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.32 7e-26 117 Zea mays Zm.53.1.S1_at AB021176.1 root cap periphery gene2 - 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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