CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0551500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os05g0551500 AK108248.1 - Conserved hypothetical protein 6e-2 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) S.X. H.G.
0.77 93.1 Os05g0574900 AK107256.1 - GRAS transcription factor domain containingprotein 6e-2 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
0.63 82.7 Os09g0497100 AK070870.1 - Pumilio 2e-3 At4g25880 APUM6 (Arabidopsis Pumilio 6) S.X. H.G.
0.57 77.0 Os04g0429400 AK108728.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-2 At5g67490 unknown protein S.X. H.G.
0.36 44.0 Os04g0429300 AK107268.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g36900 RAP2.10 (related to AP2 10) S.X. H.G.
0.36 44.0 Os02g0296400 BI800847 - Cell differentiation protein rcd1 4e+0 At1g80110 ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.9 99.9 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
44.9 99.9 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
42.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.0 99.6 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
25.2 99.5 GSM159214 Seed (S3, 5 - 10 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
22.7 99.3 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
14.5 98.6 GSM159215 Seed (S3, 5 - 10 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.5 98.3 GSM159213 Seed (S3, 5 - 10 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
11.1 98.2 GSM159217 Seed (S4, 11 - 20 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Os06g0329100 9634.m02193 - - 4e-1 At4g11570 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 8e-3 44 Os04g0254200 9632.m01640 - - 4e+0 At4g33660 unknown protein C.G. S.X.
0.02 3e-2 42 Os07g0266800 9635.m01631 - - 7e+0 At1g62333 unknown protein C.G. S.X.
0.01 3e-2 42 Os02g0527900 9630.m03092 - Curculin-like (mannose-binding) lectin domaincontaining protein 5e-2 At1g73500 MKK9 (MAP KINASE KINASE 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-2 40 Arabidopsis thaliana At1g49820 841405 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) encodes 5-methylthioribose kinase, involved in methionine cycle - - - C.G. S.X.
0.02 8e-2 40 Glycine max GmaAffx.71907.1.S1_at BQ252738 - - 2e-2 At3g52370 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) C.G. S.X.
0.02 3e-5 50 Hordeum vulgare Contig12775_at Contig12775 - - 1e+0 At3g63490 ribosomal protein L1 family protein C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.207861.1.S1_x_at pmrna15607 hypothetical protein - 2e-47 At1g26780 myb family transcription factor (MYB117) C.G. S.X.
0.16 1e-15 85 Triticum aestivum Ta.6084.1.S1_at CD899748 - - 9e+0 At4g00200 DNA binding C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1615722_s_at CF604933 aquaporin-like - 4e-28 At2g45960 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) C.G. S.X.
0.02 3e-2 40 Zea mays Zm.9415.2.A1_at BM348481 - - 7e-2 At5g01075 beta-galactosidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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