CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0547100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os05g0547100 AK121657.1 - Conserved hypothetical protein 4e+0 At3g19220 SCO2 (SNOWY COTYLEDON 2) S.X. H.G.
0.50 68.0 Os03g0779000 NM_184984.1 - Conserved hypothetical protein 2e+0 At3g25200 unknown protein S.X. H.G.
0.50 68.0 Os03g0390900 AK068299.1 - - 8e-5 At5g22790 RER1 (RETICULATA-RELATED 1) S.X. H.G.
0.47 62.3 Os09g0427300 AK121239.1 - Hypothetical protein 3e+0 At3g49540 unknown protein S.X. H.G.
0.38 46.9 Os08g0263300 AK067503.1 - Conserved hypothetical protein 4e-6 At4g05060 vesicle-associated membrane family protein / VAMP family protein S.X. H.G.
0.29 31.1 Os04g0163800 AK063533.1 - Protein of unknown function DUF594 family protein 3e-1 At3g27920 ATMYB0 (MYB DOMAIN PROTEIN 0) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
40.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.0 97.6 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
6.6 97.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
6.1 97.1 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
5.9 97.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.9 96.5 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.8 96.5 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.6 96.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.6 96.3 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-40 169 Os03g0750900 9631.m05301 - Conserved hypothetical protein 2e+0 At1g21770 - C.G. S.X.
0.18 2e-92 341 Os07g0118500 9635.m00179 - - 1e+0 At3g26934 unknown protein C.G. S.X.
0.04 6e-22 107 Os02g0677800 AK064865.1 - 40S ribosomal protein S13-2 5e-13 At3g60770 40S ribosomal protein S13 (RPS13A) C.G. S.X.
0.04 3e-8 61 Os09g0110500 AK069507.1 - Hypothetical protein 2e+0 At2g19300 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e+0 34 Arabidopsis thaliana At3g19220 821456 SCO2 (SNOWY COTYLEDON 2) Encodes a zinc finger protein that is similar to DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids. - - - C.G. S.X.
0.03 1e-3 46 Glycine max GmaAffx.1836.1.S1_at BU547933 - - 8e-2 At2g32080 PUR ALPHA-1 C.G. S.X.
0.16 6e-25 115 Hordeum vulgare Contig15877_at Contig15877 - - 4e-2 At4g17905 ATL4H C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.58364.1.S1_at CK107469 hypothetical protein - 8e-39 At5g19010 MPK16 C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.114233.1.S1_at CA596357 - - 1e+0 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1608637_at BQ792632 hypothetical protein LOC100246087 - 4e+0 At2g35080 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding C.G. S.X.
0.02 1e-1 38 Zea mays Zm.8711.2.S1_x_at BM338693 autophagy-related 8d - 3e-10 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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