CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0546400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os05g0546400 AK109087.1 - Conserved hypothetical protein 1e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.73 91.1 Os05g0546300 AK108536.1 - Conserved hypothetical protein 6e-1 At2g33310 IAA13 S.X. H.G.
0.55 73.7 Os11g0661800 AK107024.1 - Hypothetical protein 4e+0 At5g50335 unknown protein S.X. H.G.
0.55 73.7 Os02g0759400 AY579411.1 - Zn-finger, RING domain containing protein 7e-2 At5g41400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 68.0 Os01g0934400 AK058904.1 - Conserved hypothetical protein 6e-3 At3g05410 unknown protein S.X. H.G.
0.40 51.1 Os01g0862800 AK071274.1 - No apical meristem (NAM) protein domain containingprotein 2e-1 At3g15680 zinc finger (Ran-binding) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.1 99.9 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
38.9 99.8 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
21.1 99.2 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
19.8 99.1 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
19.0 99.0 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
18.3 98.9 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
16.4 98.8 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
15.0 98.6 GSM278854 KT95-418-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
11.2 98.2 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.9 98.0 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-12 75 Os05g0545800 9633.m04400 - - 1e+0 At1g52855 unknown protein C.G. S.X.
0.11 2e-4 48 Os05g0546300 AK108536.1 - Conserved hypothetical protein 6e-1 At2g33310 IAA13 C.G. S.X.
0.02 2e-4 48 Os09g0497900 AK102511.1 - No apical meristem (NAM) protein domain containingprotein 1e-21 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) C.G. S.X.
0.02 1e-3 46 Os02g0225900 9630.m01220 - Conserved hypothetical protein 1e-2 At2g01430 ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) C.G. S.X.
0.02 1e-3 46 Os07g0201500 AK061074.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 4e+0 At4g30460 glycine-rich protein C.G. S.X.
0.02 1e-3 46 Os12g0482500 AK120590.1 - Hypothetical protein 2e-1 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) C.G. S.X.
0.01 2e-4 48 Os04g0653600 AK059064.1 - AP2/EREBP transcription factor BABY BOOM1 3e+0 At2g21330 fructose-bisphosphate aldolase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At1g17880 838367 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative F:transcription factor activity;P:response to salt stress;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.03 1e-2 42 Glycine max Gma.8119.2.S1_at CD410224 - - 8e-2 At1g19730 ATTRX4 C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig12545_at Contig12545 - - 1e-3 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) C.G. S.X.
0.04 1e-2 42 Populus trichocarpa PtpAffx.28965.1.S1_at DN484862 - - 7e-1 At3g56850 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) C.G. S.X.
0.04 8e-3 42 Triticum aestivum Ta.7653.1.A1_at CD913758 - - 1e+0 At5g09978 PEP7 (ELICITOR PEPTIDE 7 PRECURSOR) C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1611775_at CB921948 hypothetical protein LOC100245748 - 1e-6 At5g09250 KIWI C.G. S.X.
0.03 1e-2 40 Zea mays Zm.11990.1.A1_at BM382449 - - 8e+0 At5g23830 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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