Gene omics information

Query gene ID	Os05g0528000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.6	Os05g0528000	AK120905.1	-	RbohAOsp (Fragment)	2e-27	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0755000	CR285414	-	Putative methyltransferase DUF248 family protein	5e+0	Atcg00740	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os03g0333200	AK099791.1	-	Resistance protein candidate (Fragment)	2e-58	At3g51550	FER (FERONIA)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os03g0300000	AK060863.1	-	The start codon is not identified.	1e-14	At3g62720	XT1 (XYLOSYLTRANSFERASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	Os11g0157300	AK071072.1	-	Harpin-induced 1 domain containing protein	3e+0	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	7.2	Os05g0218400	CB680782	-	Protein kinase domain containing protein	4e-18	At3g24550	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	98.7	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
13.2	98.4	GSM195220	stigma 3, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
11.6	98.2	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
6.7	97.3	GSM159189	Young inflorescence (P1, upto 3 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
6.2	97.1	GSM159198	Inflorescence (P4, 10 - 15 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
6.0	97.0	GSM304646	Unstable transgenic line (1)	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
5.6	96.9	GSM159199	Inflorescence (P4, 10 - 15 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
5.6	96.9	GSM375767	gid1-3_ shoot_replicate 3	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
5.4	96.8	GSM159200	Inflorescence (P4, 10 - 15 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
5.3	96.7	GSM159191	Young inflorescence (P1, upto 3 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	1998	Os01g0734200	AK103747.1	-	RbohAOsp (Fragment)	2e-31	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3e-16	89	Os05g0465800	AK072353.1	-	Cytochrome b-245, heavy chain family protein	1e-16	At5g60010	FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	6e-11	71	Os09g0438000	AK109935.1	-	Respiratory burst oxidase protein E	7e-5	At5g60010	FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	4e-6	56	Os01g0835500	AK066013.1	-	Respiratory burst oxidase homolog	7e-12	At5g60010	FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	6e-11	71	Os08g0114000	AK107979.1	-	Conserved hypothetical protein	7e+0	At1g03850	glutaredoxin family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-3	48	Os01g0835600	AK064796.1	-	HMG-I and HMG-Y, DNA-binding domain containingprotein	2e-4	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-27	125	Arabidopsis thaliana	At1g64060	842710	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-4	50	Glycine max	Gma.6763.1.A1_at	BU544794	-	-	1e-30	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select
0.22	1e-166	587	Hordeum vulgare	Contig12420_at	Contig12420	-	-	8e-25	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select
0.24	8e-22	107	Populus trichocarpa	PtpAffx.203269.1.S1_at	pmrna6479	-	-	2e-73	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	2e-154	547	Triticum aestivum	TaAffx.119266.1.S1_at	BJ280207	-	-	6e-3	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1613991_at	CF510955	hypothetical protein LOC100252545	-	5e-4	At1g67740	PSBY	C.G.	S.X.	Please select
0.47	1e-144	513	Zea mays	Zm.4309.1.S1_at	AW052961	respiratory burst oxidase protein B	-	1e-25	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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