CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0518200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os05g0518200 AK107178.1 - Conserved hypothetical protein 3e-2 At5g55130 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) S.X. H.G.
0.77 93.1 Os01g0739700 AK063960.1 - Glycoside hydrolase, family 17 protein 1e-6 At4g29360 glycosyl hydrolase family 17 protein S.X. H.G.
0.73 91.1 Os05g0589700 AK068031.1 - Dual-specific kinase DSK1 2e-28 At3g13690 protein kinase family protein S.X. H.G.
0.67 87.2 Os03g0335500 AK119808.1 - Protein kinase domain containing protein 5e-4 At3g56370 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.60 79.7 Os06g0597400 AB081950.1 - - 4e-20 At5g43810 ZLL (ZWILLE) S.X. H.G.
0.55 73.7 Os06g0203800 AK073793.1 - ERECTA-like kinase 1 9e-18 At2g26330 ER (ERECTA) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.8 99.7 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
24.2 99.4 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
23.7 99.4 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
18.0 98.9 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
14.9 98.6 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
12.7 98.4 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.6 98.4 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.2 98.2 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.6 98.1 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
10.2 98.0 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-3 48 Os05g0361000 9633.m02686 - Cytochrome P450 family protein 3e+0 At5g63150 unknown protein C.G. S.X.
0.01 1e-2 44 Os01g0869400 AK063342.1 - The start codon is not identified. 3e-3 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) C.G. S.X.
0.01 6e-2 42 Os01g0186200 AK109372.2 - Phototropin 3e-3 At2g02710 PLPB (PAS/LOV PROTEIN B) C.G. S.X.
0.01 6e-2 42 Os05g0424300 AK120987.1 - Cytochrome P450 family protein 3e+0 At1g36240 60S ribosomal protein L30 (RPL30A) C.G. S.X.
0.01 6e-2 42 Os07g0251400 9635.m01465 - - 2e+0 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-2 42 Arabidopsis thaliana At5g55130 835604 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) putative molybdopterin synthase sulphurylase (cnx5) - - - C.G. S.X.
0.01 2e-1 40 Glycine max GmaAffx.82822.1.S1_at AI460612 - - 2e-32 At1g20920 DEAD box RNA helicase, putative C.G. S.X.
0.06 2e-4 48 Hordeum vulgare HU01E06w_at HU01E06w - - 5e+0 At3g24450 copper-binding family protein C.G. S.X.
0.01 6e-1 38 Populus trichocarpa PtpAffx.10330.6.S1_at CV245094 - - 9e-1 At4g13095 LCR37 (Low-molecular-weight cysteine-rich 37) C.G. S.X.
0.01 5e-1 38 Triticum aestivum TaAffx.30907.1.S1_at CA621200 - - 7e-2 At4g10960 UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5) C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1617625_at CB006850 hypothetical LOC100246722 - 2e-6 At3g05680 EMB2016 (embryo defective 2016) C.G. S.X.
0.01 8e-1 36 Zea mays Zm.5584.1.S1_at AW424391 - - 1e-2 At2g36590 ProT3 (PROLINE TRANSPORTER 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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