CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0517100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os05g0517100 9633.m04111 - - 3e-2 At5g01840 OFP1 (OVATE FAMILY PROTEIN 1) S.X. H.G.
0.67 87.2 Os10g0532000 AK106313.1 - No apical meristem (NAM) protein domain containingprotein 3e-12 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) S.X. H.G.
0.50 68.0 Os08g0452100 9636.m03523 - Subtilisin-like protease (Fragment) 3e-10 At3g14240 subtilase family protein S.X. H.G.
0.09 4.9 Os06g0710400 AK062418.1 - Hypothetical protein 3e-2 At3g24860 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.04 2.0 Os04g0618900 9632.m05117 - - 6e-2 At2g01400 unknown protein S.X. H.G.
0.04 2.0 Os07g0646500 9635.m04542 - SWIM Zn-finger domain containing protein 3e-1 At3g42310 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.3 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.1 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.2 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.7 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-7 57 Os07g0679200 AK106500.1 - Uncharacterized plant-specific domain containingprotein 6e-1 At5g47170 unknown protein C.G. S.X.
0.03 2e-5 52 Os11g0534300 AK069995.1 - The start codon is not identified. 1e-12 At3g26935 zinc finger (DHHC type) family protein C.G. S.X.
0.03 6e-5 50 Os12g0570400 9640.m03718 - Hypothetical protein 1e+0 At3g09032 unknown protein C.G. S.X.
0.03 2e-4 48 Os12g0438100 AK108104.1 - Hypothetical protein 2e-2 At3g07220 transcriptional activator, putative C.G. S.X.
0.03 1e-3 46 Os06g0516200 9634.m03021 - - 3e+0 At4g11660 AT-HSFB2B C.G. S.X.
0.02 2e-4 48 Os05g0237400 AK107045.1 - Protein kinase 3e-19 At3g12690 AGC1.5 (AGC KINASE 1.5) C.G. S.X.
0.02 1e-3 46 Os06g0152500 9634.m00518 - Protein prenyltransferase domain containingprotein 2e-2 At4g16380 metal ion binding C.G. S.X.
0.02 1e-3 46 Os08g0327800 9636.m02336 - - 2e-1 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At5g01840 831813 OFP1 (OVATE FAMILY PROTEIN 1) Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation. - - - C.G. S.X.
0.04 4e-2 40 Glycine max GmaAffx.83013.1.S1_at BQ080142 - - 8e-1 At5g16023 RTFL18 (ROTUNDIFOLIA LIKE 18) C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig13668_at Contig13668 - - 2e+0 At2g46820 PSI-P (PHOTOSYSTEM I P SUBUNIT) C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.218717.1.S1_at pmrna34439 - - 7e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.04 1e-4 48 Triticum aestivum TaAffx.6316.1.S1_at CA688208 - - 4e-2 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1615135_at CD797887 - - 1e+1 At5g41992 CPuORF58 (Conserved peptide upstream open reading frame 58) C.G. S.X.
0.11 2e-29 129 Zea mays Zm.18957.1.A1_at CO533987 - - 1e+0 At1g08160 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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