CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0516400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os05g0516400 AK068854.1 - Pistil-specific extensin-like protein familyprotein 3e+0 At3g03405 - S.X. H.G.
0.55 73.7 Os08g0207300 AK110728.1 - Conserved hypothetical protein 4e-1 At4g21610 LOL2 (LSD ONE LIKE 2) S.X. H.G.
0.35 41.7 Os03g0394750 NM_192239.1 - - 7e+0 At5g64400 - S.X. H.G.
0.32 36.3 Os12g0623300 9640.m04210 - - 1e+0 At5g16110 unknown protein S.X. H.G.
0.22 19.4 Os10g0520200 NM_197388.1 - - 2e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
0.21 17.9 Os01g0915300 AK119435.1 - - 1e+0 At4g13250 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.3 99.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.2 99.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
35.2 99.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.8 99.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.3 99.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.6 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.5 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.9 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 2e-81 305 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein C.G. S.X.
0.11 7e-29 131 Os10g0104800 AK100339.1 - Serine/threonine protein kinase family protein 1e-15 At1g49270 protein kinase family protein C.G. S.X.
0.09 7e-32 141 Os03g0568800 AK070389.1 - Protein kinase domain containing protein 1e-6 At1g10620 protein kinase family protein C.G. S.X.
0.06 7e-29 131 Os06g0486000 AK100169.1 - Protein kinase domain containing protein 5e-3 At1g23540 protein kinase family protein C.G. S.X.
0.03 3e-4 48 Os03g0673100 9631.m04568 - Homeotic protein knotted-1 (TKN1) 2e-6 At1g62360 STM (SHOOT MERISTEMLESS) C.G. S.X.
0.03 1e-3 46 Os12g0149000 AK108734.1 - Hypothetical protein 4e-2 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.03 1e-3 46 Os12g0240900 9640.m01336 - Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT) 6e-2 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.02 2e-5 52 Os03g0722600 9631.m05008 - CAP protein family protein 2e-17 At4g34490 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) C.G. S.X.
0.02 3e-4 48 Os03g0819600 AK061390.1 - Chalcone isomerase (EC 5.5.1.6) 2e+0 At3g01516 unknown protein C.G. S.X.
0.02 1e-3 46 Os12g0511100 CB650219 - Hypothetical protein 4e-1 At1g20875 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At3g03405 821264 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 6e-2 40 Glycine max PsAffx.C2000023_at PsAffx.C2000023 - - 2e-3 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) C.G. S.X.
0.04 8e-2 38 Hordeum vulgare Contig8002_at Contig8002 - - 3e-7 At5g65207 unknown protein C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.43837.1.A1_s_at CV256587 hypothetical protein - 3e-6 At4g24026 unknown protein C.G. S.X.
0.04 4e-2 40 Triticum aestivum TaAffx.66213.1.S1_s_at CN009518 - - 1e+0 At2g33520 - C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1613120_at CF404918 hypothetical LOC100248029 - 5e-3 At1g18810 phytochrome kinase substrate-related C.G. S.X.
0.02 2e-2 40 Zea mays Zm.14497.13.A1_a_at CB924237 hypothetical protein LOC100273745 - 4e-19 At1g07790 HTB1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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