CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0515700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 91.9 Os05g0515700 AK069076.1 - Conserved hypothetical protein 2e-14 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) S.X. H.G.
0.48 63.7 Os06g0160400 AK121877.1 - Conserved hypothetical protein 2e+0 At1g53625 unknown protein S.X. H.G.
0.43 55.4 Os04g0485200 AK069013.1 - UBX domain containing protein 1e-2 At2g18530 protein kinase family protein S.X. H.G.
0.40 51.1 Os07g0295200 AK102836.1 - Protein of unknown function DUF167 family protein 1e-29 At5g63440 unknown protein S.X. H.G.
0.35 41.7 Os11g0206700 AK069964.1 - Guanine nucleotide binding protein (G-protein),alpha subunit family protein 4e-29 At1g31930 XLG3 (extra-large GTP-binding protein 3) S.X. H.G.
0.32 36.3 Os06g0105600 AK106556.1 - Hypothetical protein 3e-4 At5g47480 unknown protein S.X. H.G.
0.31 34.5 Os04g0452400 AK068069.1 - Ubiquitin-specific protease 4 (UBP4)(At2g22310/T26C19.3) 1e-42 At2g22310 ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) S.X. H.G.
0.31 34.5 Os12g0165000 AK112045.1 - WD40-like domain containing protein 3e+0 At3g05090 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.30 32.7 Os01g0916200 AK073904.1 - Adaptin, N-terminal domain containing protein 4e-35 At1g31730 epsilon-adaptin, putative S.X. H.G.
0.24 22.4 Os01g0862300 AK120353.1 - Sorting nexin 1 2e-20 At5g06140 SNX1 (SORTING NEXIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 95.3 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.5 95.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.4 95.2 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.3 95.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.3 95.1 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.2 94.9 GSM173094 Rice OsSRT1 RNAi transgenic line LM3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.2 94.9 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.2 94.9 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
3.0 94.6 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.0 94.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 5e-128 460 Os01g0753000 NM_191259.1 - Conserved hypothetical protein 2e-11 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) C.G. S.X.
0.02 4e-2 42 Os07g0681300 9635.m04875 - Cytochrome P450 family protein 3e+0 At3g04500 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 4e-2 42 Os02g0180500 AK101220.1 - Chorismate mutase CM2 (EC 5.4.99.5) (Chorimatemutase) 2e-1 At2g36410 unknown protein C.G. S.X.
0.01 4e-2 42 Os02g0194900 9630.m00931 - BZIP transcription factor-like protein 1e-4 At5g06950 AHBP-1B C.G. S.X.
0.01 4e-2 42 Os10g0499800 AK099535.1 - Fertility restorer 1e-1 At4g35710 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-14 81 Arabidopsis thaliana At1g28520 839752 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM - - - C.G. S.X.
0.09 2e-15 85 Glycine max Gma.9278.1.S1_at BE058127 - - 3e-20 At2g42400 VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2) C.G. S.X.
0.29 3e-92 339 Hordeum vulgare Contig12784_at Contig12784 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) C.G. S.X.
0.19 1e-44 182 Populus trichocarpa PtpAffx.203861.1.S1_at pmrna7626 hypothetical protein - 7e-67 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) C.G. S.X.
0.27 3e-81 303 Triticum aestivum TaAffx.12873.1.S1_at BJ220987 - - 1e-5 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1620550_at AY427083.1 - - 2e-1 At3g63420 AGG1 (Arabidopsis Ggamma-subunit 1) C.G. S.X.
0.12 2e-16 87 Zea mays Zm.18440.1.A1_at CD981825 hypothetical protein LOC100280171 - 1e+0 At5g46090 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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