CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0508400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os05g0508400 AK073221.1 - Jacalin-related lectin domain containing protein 3e-4 At1g19715 jacalin lectin family protein S.X. H.G.
0.67 87.2 Os09g0559600 AK109214.1 - Thioredoxin domain 2 containing protein 3e-1 At1g14630 unknown protein S.X. H.G.
0.25 24.1 Os03g0182400 AK100037.1 - SAC domain protein 4 3e-2 At3g14205 phosphoinositide phosphatase family protein S.X. H.G.
0.14 9.3 Os12g0283900 AK106931.1 - Protein prenyltransferase domain containingprotein 2e-11 At3g46610 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.14 9.3 Os07g0578200 AK070952.1 - Conserved hypothetical protein 1e-12 At2g44280 - S.X. H.G.
0.05 2.5 Os01g0390400 AK106834.1 - Nucleic acid-binding OB-fold domain containingprotein 4e-16 At4g27340 Met-10+ like family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.3 98.1 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.2 98.0 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.0 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.3 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-8 61 Os01g0775500 AK100936.1 - Jacalin-related lectin domain containing protein 2e-4 At1g73040 jacalin lectin family protein C.G. S.X.
0.01 1e-1 40 Os01g0166800 NM_184521.1 - Conserved hypothetical protein 4e-9 At2g40550 ETG1 (E2F TARGET GENE 1) C.G. S.X.
0.01 1e-1 40 Os02g0115600 AK067366.1 - RNA binding S1 domain containing protein 9e-2 At4g26780 AR192 C.G. S.X.
0.01 5e-1 38 Os03g0707900 AK067052.1 - Toc64 2e-2 At5g09420 ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) C.G. S.X.
0.01 2e+0 36 Os01g0500900 AK066713.1 - Tyrosyl-tRNA synthetase, class Ib family protein 4e-6 At3g02660 emb2768 (EMBRYO DEFECTIVE 2768) C.G. S.X.
0.01 2e+0 36 Os01g0556600 NM_193463.1 - Nucleic acid-binding OB-fold domain containingprotein 9e-1 At5g41190 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-4 48 Arabidopsis thaliana At1g19715 838560 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB - - - C.G. S.X.
0.01 6e+0 34 Glycine max GmaAffx.5864.1.S1_at BU083725 - - 6e-5 At4g17460 HAT1 C.G. S.X.
0.01 9e-3 42 Hordeum vulgare EBro08_SQ003_A06_at EBro08_SQ003_A06 - - 1e+0 At2g32190 unknown protein C.G. S.X.
0.04 2e-3 46 Populus trichocarpa PtpAffx.201633.1.S1_s_at pmrna3233 hypothetical protein - 2e-11 At1g19715 jacalin lectin family protein C.G. S.X.
0.13 2e-30 135 Triticum aestivum Ta.29591.1.S1_at CK205596 - - 2e+1 At5g40860 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1606912_at BQ795720 hypothetical protein LOC100264144 - 2e-1 At3g23420 F-box family protein-related C.G. S.X.
0.01 7e+0 32 Zea mays ZmAffx.970.1.A1_at AI833868 - - 8e-1 At3g10405 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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