Gene omics information

Query gene ID Os05g0497300
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.9Os05g0497300AK111755.1-Ethylene responsive element binding factor 5(AtERF5)4e-14At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)S.X.H.G.
0.6787.2Os04g05435009632.m04421-Homeodomain-like containing protein2e+0At2g44730transcription factorS.X.H.G.
0.5068.0Os09g0486500AF140722.2-Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein)2e+0At5g24290integral membrane family proteinS.X.H.G.
0.5068.0Os04g0685300AF039532.1-Harpin-induced 1 domain containing protein1e-1At2g24440selenium bindingS.X.H.G.
0.4660.9Os03g0761100AK066083.1-Protein phosphatase 2C-like protein6e-8At4g33920protein phosphatase 2C family protein / PP2C family proteinS.X.H.G.
0.3644.0Os01g0949300AK072758.1-Calcium-binding EF-hand domain containing protein5e-1At1g05300ZIP5S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.897.8GSM159180Mature leaf, biological rep 1GSE6893Expression data for reproductive development in rice
8.697.8GSM159181Mature leaf, biological rep 2GSE6893Expression data for reproductive development in rice
7.797.6GSM278846WuYun3-RSV infected, biological rep3GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.297.4GSM375649Taichung 65_shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
7.097.4GSM159200Inflorescence (P4, 10 - 15 cm), biological rep 3GSE6893Expression data for reproductive development in rice
6.897.3GSM159189Young inflorescence (P1, upto 3 cm), biological rep 1GSE6893Expression data for reproductive development in rice
6.797.3GSM159191Young inflorescence (P1, upto 3 cm), biological rep 3GSE6893Expression data for reproductive development in rice
6.497.2GSM375648Taichung 65_shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
6.397.2GSM375766gid1-3_ shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
6.297.1GSM375765gid1-3_ shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.153e-35151Os01g0797600AK069262.1-Ethylene responsive element binding factor3(OsERF3)9e-9At5g44210ERF9 (ERF DOMAIN PROTEIN 9)C.G.S.X.
0.124e-25117Os05g04972009633.m03916-Ethylene responsive element binding factor 4(AtERF4)6e-9At5g44210ERF9 (ERF DOMAIN PROTEIN 9)C.G.S.X.
0.091e-1895Os02g0654700AK073812.1-Ethylene-responsive element binding protein3e-3At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)C.G.S.X.
0.091e-1895Os02g0764700AK107146.1-Pathogenesis-related transcriptional factor andERF domain containing protein3e-5At1g71130AP2 domain-containing transcription factor, putativeC.G.S.X.
0.095e-1893Os09g0287000AK106057.1--1e-1At1g54200unknown proteinC.G.S.X.
0.055e-1893Os12g0582900AK109606.1-AP2 domain containing protein RAP2.11 (Fragment)2e-4At1g71130AP2 domain-containing transcription factor, putativeC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.154e-1479Arabidopsis thalianaAt3g15210820752ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.---C.G.S.X.
0.184e-30133Glycine maxGma.16480.2.S1_atAI900301--3e-22At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)C.G.S.X.
0.404e-68258Hordeum vulgareContig6636_atContig6636--4e-11At5g44210ERF9 (ERF DOMAIN PROTEIN 9)C.G.S.X.
0.108e-756Populus trichocarpaPtpAffx.31347.1.A1_atCV239271AP2/ERF domain-containing transcription factor-4e-8At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)C.G.S.X.
0.232e-34147Triticum aestivumTa.14000.1.S1_atBQ789086ethylene-responsive factor-like transcription factor ERFL1a-1e-5At5g44210ERF9 (ERF DOMAIN PROTEIN 9)C.G.S.X.
0.172e-1995Vitis vinifera1611910_s_atAY395745.1similar to putative ethylene response factor ERF3b-9e-14At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)C.G.S.X.
0.353e-68258Zea maysZm.12317.1.S1_atAY106969.1ethylene-responsive transcription factor 4-2e-12At5g44210ERF9 (ERF DOMAIN PROTEIN 9)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage