CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0486100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.67 87.2 Os11g0669100 AK068628.1 - Hypothetical protein 5e+0 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) S.X. H.G.
0.61 81.2 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) S.X. H.G.
0.61 81.2 Os10g0482900 AK071332.1 - Glutaredoxin domain containing protein 3e-4 At3g11920 glutaredoxin-related S.X. H.G.
0.50 68.0 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein S.X. H.G.
0.44 58.1 Os07g0613600 AK107990.1 - Hypothetical protein 3e-1 At4g19270 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.3 99.6 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
25.4 99.5 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
25.3 99.5 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
15.4 98.7 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
14.4 98.6 GSM154940 Root_DMSO-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.9 98.4 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
12.9 98.4 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.4 98.3 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
12.3 98.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
12.0 98.3 GSM154941 Root_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-27 125 Os03g0329700 CB670789 - Protein kinase domain containing protein 3e-2 At5g49770 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.08 2e-29 133 Os12g0210400 AK068774.1 - Protein kinase domain containing protein 7e-3 At5g49780 ATP binding / kinase/ protein serine/threonine kinase C.G. S.X.
0.05 7e-23 111 Os04g0156200 9632.m00640 - Ribulose-phosphate binding barrel domaincontaining protein 7e-2 At1g64330 myosin heavy chain-related C.G. S.X.
0.04 4e-18 95 Os11g0232100 AK105669.1 - Protein kinase domain containing protein 7e-3 At1g72180 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 2e-16 89 Os04g0439600 AK109788.1 - Protein kinase domain containing protein 4e-4 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
0.04 1e-14 83 Os03g0281500 AK100137.1 - LpimPth3 1e-1 At5g54380 THE1 (THESEUS1) C.G. S.X.
0.04 1e-14 83 Os08g0376300 AK072348.1 - Protein kinase domain containing protein 4e-7 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-9 63 Arabidopsis thaliana At5g49760 835039 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA - - - C.G. S.X.
0.03 1e-7 59 Glycine max GmaAffx.92535.1.S1_at CF808260 - - 6e-2 At1g26970 protein kinase, putative C.G. S.X.
0.12 2e-32 141 Hordeum vulgare Contig14065_at Contig14065 - - 6e-8 At5g49770 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.05 6e-4 48 Populus trichocarpa PtpAffx.219819.1.S1_at pmrna35948 hypothetical protein - 8e-27 At1g79620 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.19 6e-139 496 Triticum aestivum TaAffx.49749.1.S1_at CA639769 - - 1e-12 At1g79620 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 1e-10 67 Vitis vinifera 1616189_at CF511570 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.04 1e-11 71 Zea mays Zm.1140.1.S1_at BM073428 hypothetical protein LOC100279272 - 4e-14 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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