CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0485000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os05g0485000 AK106318.1 - Conserved hypothetical protein 2e+0 At1g03600 photosystem II family protein S.X. H.G.
0.80 94.6 Os05g0559000 AK100171.1 - Glyoxal oxidase, N-terminal domain containingprotein 7e-2 At1g14430 glyoxal oxidase-related S.X. H.G.
0.57 77.0 Os04g0508600 AK120762.1 - Lung seven transmembrane receptor family protein 2e-1 At5g42090 - S.X. H.G.
0.57 77.0 Os10g0193500 AK107022.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-1 At3g50870 MNP (MONOPOLE) S.X. H.G.
0.42 53.9 Os06g0472900 AK072945.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-2 At5g51890 peroxidase S.X. H.G.
0.19 15.1 Os09g0297800 AK064738.1 - Conserved hypothetical protein 4e-1 At4g28280 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
238.5 100.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
48.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 1298 Os01g0817400 NM_191084.1 - Conserved hypothetical protein 6e+0 At5g37060 ATCHX24 C.G. S.X.
0.15 5e-36 155 Os05g0276100 AK069092.1 - Na+/H+ exchangeing protein-like 2e-5 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
0.09 4e-15 85 Os05g0113300 AK106443.1 - Conserved hypothetical protein 4e-4 At3g53720 ATCHX20 (CATION/H+ EXCHANGER 20) C.G. S.X.
0.06 2e-7 59 Os05g0382200 9633.m02899 - Na+/H+ exchangeing protein-like 2e-1 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
0.06 8e-7 57 Os12g0121600 AK072782.1 - Conserved hypothetical protein 1e+0 At5g03380 heavy-metal-associated domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At1g03600 839449 photosystem II family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;BOP - - - C.G. S.X.
0.01 1e-1 40 Glycine max PsAffx.psZO001iA09r_s_at PsAffx.psZO001iA09r - - 3e-1 At1g70780 unknown protein C.G. S.X.
0.02 2e-1 38 Hordeum vulgare Contig8236_at Contig8236 - - 5e-1 At1g54780 thylakoid lumen 18.3 kDa protein C.G. S.X.
0.01 5e-1 38 Populus trichocarpa PtpAffx.135645.1.S1_at CK107171 hypothetical protein - 5e+0 At2g18500 OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) C.G. S.X.
0.04 2e-3 46 Triticum aestivum TaAffx.119925.1.A1_at BJ251519 - - 4e+0 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1609077_at CF606671 hypothetical protein LOC100264912 - 3e-13 At5g16050 GRF5 (GENERAL REGULATORY FACTOR 5) C.G. S.X.
0.01 4e-2 40 Zea mays Zm.10406.1.S1_at BQ279422 - - 5e+0 At5g35375 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0006885 Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage