Gene omics information

Query gene ID	Os05g0482600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.9	Os05g0482600	AK120343.1	-	WD40-like domain containing protein	3e-28	At3g54190	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.68	87.5	Os11g0244800	AK103215.1	-	Alfin-1	3e-15	At1g14510	AL7 (ALFIN-LIKE 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os01g0924900	AK067886.1	-	GTP-binding signal recognition particle SRP54,G-domain containing protein	1e-3	At5g63550	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os08g0137200	AK065561.1	-	Actin/actin-like family protein	3e-10	At1g18450	ATARP4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os02g0564100	D64039.1	-	Zn-finger-like, PHD finger domain containingprotein	3e+0	At5g37780	CAM1 (CALMODULIN 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.41	52.4	Os02g0208200	AK067315.1	-	Hypothetical protein	5e-1	At1g33850	40S ribosomal protein S15, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	48.3	Os10g0114500	AY569035.1	-	Barley B recombinant like-protein B (Barley Brecombinant like-protein A)	8e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	48.3	Os09g0248200	AK060788.1	-	contains InterPro domain(s): IPR010989	1e-3	At5g48385	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.37	45.0	Os03g0783000	AK069426.1	-	Conserved hypothetical protein	7e-14	At3g60830	ATARP7 (ACTIN-RELATED PROTEIN 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.37	45.0	Os07g0682400	AK111556.1	-	Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein	3e-2	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	97.8	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.1	97.7	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.8	97.6	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.3	97.5	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.8	97.3	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.4	97.2	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.1	97.1	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.1	97.1	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.8	97.0	GSM429983	Rice mutant phoenix (pho) panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.9	96.5	GSM429982	Rice wild-type panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	759	Os01g0817800	AK073827.1	-	WD40-like domain containing protein	1e-18	At3g54190	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	7e-173	609	Os05g0464100	AK073132.1	-	Conserved hypothetical protein	2e+0	At5g43250	NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	7e-28	127	Os10g0459800	NM_196854.1	-	-	4e-2	Atmg00280	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	4e-11	71	Os12g0498300	CR280249	-	WD40-like domain containing protein	2e-22	At3g54190	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	8e-6	54	Os02g0781800	AK099467.1	-	WD40-like domain containing protein	6e-10	At3g54190	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	5e-7	57	Os11g0257800	CB629785	-	Conserved hypothetical protein	6e+0	At5g13250	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-3	44	Os02g0205000	AK073514.1	-	-	6e-1	At4g11630	ribosomal protein L19 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-3	44	Os09g0116400	AK101351.1	-	CBF/Mak21 domain containing protein	2e-6	At1g72440	EDA25 (embryo sac development arrest 25)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	3e-28	127	Arabidopsis thaliana	At3g54190	824586	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	5e-28	127	Glycine max	Gma.10781.1.S1_a_at	AW101008	-	-	7e-29	At2g38630	-	C.G.	S.X.	Please select
0.65	0	1467	Hordeum vulgare	Contig3161_at	Contig3161	-	-	3e-19	At3g54190	-	C.G.	S.X.	Please select
0.42	1e-50	202	Populus trichocarpa	PtpAffx.211268.1.S1_at	pmrna22106	hypothetical protein	-	5e-66	At3g54190	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-39	165	Triticum aestivum	Ta.8243.1.S1_at	CA712578	-	-	4e-5	At2g38630	-	C.G.	S.X.	Please select
0.17	7e-36	151	Vitis vinifera	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	C.G.	S.X.	Please select
0.23	2e-46	186	Zea mays	Zm.2790.1.A1_at	AW067260	hypothetical protein LOC100274410	-	1e-6	At3g54190	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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