CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0481900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os05g0481900 AK119626.1 - Auxin Efflux Carrier family protein 1e-9 At5g01990 auxin efflux carrier family protein S.X. H.G.
0.79 93.6 Os02g0631100 AK105126.1 - Conserved hypothetical protein 2e+0 At4g03320 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) S.X. H.G.
0.77 93.1 Os03g0283900 AK105569.1 - - 6e-2 At1g07870 protein kinase family protein S.X. H.G.
0.67 87.2 Os02g0548100 9630.m03271 - - 4e-2 At1g67770 TEL2 (TERMINAL EAR1-LIKE 2) S.X. H.G.
0.63 82.7 Os03g0748500 AK110695.1 - Flavodoxin/nitric oxide synthase domain containingprotein 2e-3 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) S.X. H.G.
0.61 81.2 Os12g0527500 AK109836.1 - Hypothetical protein 4e+0 At4g05070 unknown protein S.X. H.G.
0.52 69.6 Os10g0139300 AK107379.1 - Cyclin-like F-box domain containing protein 8e-1 At4g16750 DRE-binding transcription factor, putative S.X. H.G.
0.50 68.0 Os06g0656700 AK110668.1 - Hypothetical protein 6e+0 At5g19860 unknown protein S.X. H.G.
0.46 60.9 Os04g0429300 AK107268.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g36900 RAP2.10 (related to AP2 10) S.X. H.G.
0.44 58.1 Os08g0157000 9636.m00537 - Mitogen-activated protein kinase 4 9e-13 At1g01560 ATMPK11 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.6 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
58.6 99.9 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
30.9 99.7 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
12.2 98.3 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
10.5 98.1 GSM240996 Zhonghua11 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
9.8 98.0 GSM240998 gif1 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.9 97.8 GSM240994 Zhonghua11 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.6 97.8 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.6 97.8 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.5 97.7 GSM240999 gif1 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 4e-66 254 Os01g0818100 NM_191091.1 - - 2e-8 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.02 3e-2 42 Os05g0514600 AK107211.1 - 2OG-Fe(II) oxygenase domain containing protein 3e+0 At5g38070 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 3e-2 42 Os10g0516500 AK059055.1 - Hypothetical protein 7e-4 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
0.01 1e-1 40 Os11g0235200 AK100802.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 4e-22 At1g33440 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-9 65 Arabidopsis thaliana At5g01990 830729 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOB - - - C.G. S.X.
0.09 2e-8 61 Glycine max GmaAffx.25445.1.S1_at AW156230 - - 9e-10 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.38 8e-92 337 Hordeum vulgare Contig5580_s_at Contig5580 - - 7e-11 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.08 5e-6 54 Populus trichocarpa PtpAffx.48890.1.A1_at CX655572 auxin efflux carrier component, auxin transport protein - 1e-25 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.32 2e-94 347 Triticum aestivum Ta.12796.1.S1_s_at BE430492 - - 8e-16 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.05 4e-3 42 Vitis vinifera 1611919_at CB919145 hypothetical protein LOC100246780 - 4e-14 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.4222.1.S1_at AY108711.1 mitochondrial NADH ubiquinone oxidoreductase 13kD-like subunit - 7e-3 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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