CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0478400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 93.4 Os05g0478400 9633.m03736 - - 5e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein S.X. H.G.
0.67 87.2 Os08g0295800 9636.m01959 - - 2e+1 At5g62950 catalytic/ nucleotide binding S.X. H.G.
0.66 83.9 Os02g0505600 9630.m02894 - - 6e-1 At4g01410 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.64 83.4 Os02g0219000 AK064689.1 - Hypothetical protein 5e-2 At5g62750 unknown protein S.X. H.G.
0.63 82.7 Os12g0134500 9640.m00322 - - 2e+0 At5g55570 unknown protein S.X. H.G.
0.55 73.7 Os03g0427400 9631.m03082 - - 3e-1 At2g18360 hydrolase, alpha/beta fold family protein S.X. H.G.
0.54 71.9 Os03g0343100 9631.m02234 - - 3e-1 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) S.X. H.G.
0.54 71.9 Os02g0262600 9630.m01527 - - 6e+0 At5g09280 pectate lyase family protein S.X. H.G.
0.54 71.9 Os03g0799400 9631.m05754 - - 1e-1 At5g44860 unknown protein S.X. H.G.
0.53 71.3 Os08g0353000 9636.m02608 - - 1e-2 At3g23637 DVL21 (DEVIL 21) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
185.8 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-54 214 Os05g0478800 9633.m03738 - - 8e+0 At5g51220 ubiquinol-cytochrome C chaperone family protein C.G. S.X.
0.07 3e-16 87 Os01g0821600 AK108657.1 - DNA-binding WRKY domain containing protein 2e-1 At4g09460 ATMYB6 C.G. S.X.
0.05 8e-14 79 Os01g0734000 AY341845.1 - WRKY DNA binding protein 7e-13 At2g46130 WRKY43 C.G. S.X.
0.05 1e-3 46 Os01g0656400 9629.m04484 - WRKY transcription factor 15 8e-3 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.04 7e-5 50 Os04g0471700 AY341851.1 - WRKY10 (WRKY transcription factor 35) 1e-3 At4g26440 WRKY34 (WRKY DNA-BINDING PROTEIN 34) C.G. S.X.
0.04 7e-5 50 Os05g0528500 9633.m04232 - - 2e-2 At2g46130 WRKY43 C.G. S.X.
0.03 1e-3 46 Os11g0685700 9639.m04272 - WRKY transcription factor 61 1e-1 At1g66600 WRKY63 C.G. S.X.
0.01 3e-4 48 Os05g0429000 AK109617.1 - Serine hydroxymethyltransferase (EC 2.1.2.1)(Serine methylase) (Glycine hydroxymethyltransferase)(SHMT) 3e-10 At1g36370 SHM7 (serine hydroxymethyltransferase 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At1g07950 837310 surfeit locus protein 5 family protein / SURF5 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.91989.1.S1_at CF807714 - - 3e-16 At2g24570 WRKY17 C.G. S.X.
0.04 4e-3 42 Hordeum vulgare Contig13268_at Contig13268 - - 5e-12 At2g46130 WRKY43 C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.69294.1.A1_at CV270589 hypothetical protein - 8e-5 At1g55140 RNA binding / ribonuclease III C.G. S.X.
0.21 7e-56 218 Triticum aestivum TaAffx.64818.1.S1_at BJ274245 WRKY25 transcription factor - 2e+0 At2g11005 glycine-rich protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1620022_at CF413848 - - 1e+1 At4g01995 unknown protein C.G. S.X.
0.05 2e-4 46 Zea mays Zm.18098.1.A1_at CK347304 - - 7e-6 At5g24110 WRKY30 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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